I. Summary

SecReT6 ID	440
Strain	Marinomonas posidonica IVIA-Po-181
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_015559
Location	708321..731775
Comment
Function	N/A
T6SS Type	Type i; subtype i5
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	2	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	Mar181_0646	704350..705147 [+], 798	333907035	hypothetical protein
2	Mar181_0647	705140..707272 [+], 2133	333907036	major facilitator superfamily protein
3	Mar181_0648	707269..708279 [+], 1011	333907037	hypothetical protein
4	Mar181_0649	708321..710384 [+], 2064	333907038	ImpA family type VI secretion-associated protein	TssI
5	Mar181_0650	710385..710972 [+], 588	333907039	hypothetical protein
6	Mar181_0651	710972..711271 [+], 300	333907040	PAAR repeat-containing protein	PAAR
7	Mar181_0652	711298..712419 [+], 1122	333907041	hypothetical protein
8	Mar181_0653	712443..713726 [+], 1284	333907042	hypothetical protein	TssA
9	Mar181_0654	713783..714307 [+], 525	333907043	hypothetical protein	TssD
10	Mar181_0655	714336..714839 [+], 504	333907044	type VI secretion lipoprotein	TssB
11	Mar181_0656	714839..716317 [+], 1479	333907045	type VI secretion lipoprotein	TssC
12	Mar181_0657	716367..717794 [+], 1428	333907046	hypothetical protein	TssC
13	Mar181_0658	717791..718213 [+], 423	333907047	GPW/gp25 family protein	TssE
14	Mar181_0659	718206..719984 [+], 1779	333907048	type VI secretion lipoprotein	TssF
15	Mar181_0660	719975..720955 [+], 981	333907049	hypothetical protein	TssG
16	Mar181_0661	720943..723552 [+], 2610	333907050	type VI secretion ATPase, ClpV1 family	TssH
17	Mar181_0662	723555..724277 [+], 723	333907051	hypothetical protein
18	Mar181_0663	724300..725283 [+], 984	333907052	FHA domain-containing protein	Fha
19	Mar181_0664	725280..725783 [+], 504	333907053	type VI secretion lipoprotein	TssJ
20	Mar181_0665	725767..727128 [+], 1362	333907054	type VI secretion lipoprotein	TssK
21	Mar181_0666	727133..728398 [+], 1266	333907055	DotU family type IV / VI secretion system protein	TssL
22	Mar181_0667	728401..731775 [+], 3375	333907056	type VI secretion protein IcmF	TssM
23	Mar181_0668	731775..732521 [+], 747	333907057	serine/threonine protein kinase-like protein
24	Mar181_0669	732536..734014 [+], 1479	333907058	integral membrane sensor signal transduction histidine kinase
25	Mar181_0670	734018..734713 [+], 696	333907059	winged helix family two component transcriptional regulator
26	Mar181_0671	734856..736427 [+], 1572	333907060	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

N/A

N/A

N/A