 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | METME_RS04275 | 911243..912682 [+], 1440 | 503583475 | F0F1 ATP synthase subunit alpha | |
2 | METME_RS04280 | 912679..913491 [+], 813 | 503583476 | F0F1 ATP synthase subunit gamma | |
3 | METME_RS04285 | 913546..914016 [-], 471 | 908658285 | hypothetical protein | |
4 | METME_RS04290 | 914136..914531 [+], 396 | pseudogene | hypothetical protein | |
5 | METME_RS04295 | 914912..915655 [+], 744 | 503583479 | response regulator | |
6 | METME_RS04300 (tssA) | 915765..916805 [+], 1041 | 503583480 | type VI secretion system protein TssA | |
7 | METME_RS04305 (tssB) | 916832..917368 [+], 537 | 503583481 | type VI secretion system contractile sheath small subunit | |
8 | METME_RS04310 (tssC) | 917372..918862 [+], 1491 | 503583482 | type VI secretion system contractile sheath large subunit | |
9 | METME_RS04315 | 918983..919465 [+], 483 | 503583483 | type VI secretion system tube protein Hcp | |
10 | METME_RS04320 | 919535..920344 [+], 810 | 503583484 | virulence protein SciE type | |
11 | METME_RS04325 (tssE) | 920347..920850 [+], 504 | 503583485 | type VI secretion system baseplate subunit TssE | |
12 | METME_RS04330 (tssF) | 920853..922736 [+], 1884 | 503583486 | type VI secretion system baseplate subunit TssF | |
13 | METME_RS04335 (tssG) | 922700..923764 [+], 1065 | 503583487 | type VI secretion system baseplate subunit TssG | |
14 | METME_RS04340 (tssH) | 923804..926524 [+], 2721 | 503583488 | type VI secretion system ATPase TssH | |
15 | METME_RS04345 | 926790..927809 [+], 1020 | 503583489 | hypothetical protein | |
16 | METME_RS04350 | 927880..928224 [+], 345 | 752716621 | hypothetical protein | |
17 | METME_RS04355 | 928491..929525 [+], 1035 | 503583491 | hypothetical protein | |
18 | METME_RS04360 | 929576..929917 [+], 342 | 503583492 | hypothetical protein | |
19 | METME_RS04365 | 930046..930384 [+], 339 | 752717890 | PQQ-binding-like beta-propeller repeat protein | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein