 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | t2563 | 2640957..2641262 [+], 306 | 29142940 | hypothetical protein | |
2 | t2564 | 2641332..2641775 [-], 444 | 29142941 | hypothetical protein | |
3 | t2565 | 2641777..2642037 [-], 261 | 29142942 | hypothetical protein | |
4 | t2566 | 2642116..2644647 [-], 2532 | 29142943 | Rhs-family protein | |
5 | t2567 | 2644743..2645036 [-], 294 | 29142944 | hypothetical protein | |
6 | t2568 | 2645055..2645732 [-], 678 | 29142945 | hypothetical protein | |
7 | t2569 | 2645735..2649799 [-], 4065 | 29142946 | Rhs-family protein | PAAR |
8 | t2570 | 2649818..2650264 [-], 447 | 29142947 | hypothetical protein | |
9 | t2571 | 2650288..2652477 [-], 2190 | 29142948 | Rhs-family protein | TssI |
10 | t2572 | 2652840..2652947 [-], 108 | 29142949 | hypothetical protein | |
11 | t2573 | 2652955..2653392 [-], 438 | 29142950 | hypothetical protein | |
12 | t2574 | 2653419..2653835 [-], 417 | 29142951 | hypothetical protein | |
13 | t2575 | 2653963..2654424 [-], 462 | 29142952 | hypothetical protein | |
14 | t2576 | 2654409..2654879 [-], 471 | 29142953 | hypothetical protein | |
15 | t2577 | 2654922..2655689 [-], 768 | 29142954 | hypothetical protein | |
16 | t2579 | 2659787..2660281 [-], 495 | 29142955 | hypothetical protein | |
17 | t2580 | 2660313..2661062 [-], 750 | 29142956 | hypothetical protein | |
18 | t2581 | 2661067..2662368 [-], 1302 | 29142957 | hypothetical protein | TssL |
19 | t2582 | 2662365..2663708 [-], 1344 | 29142958 | hypothetical protein | TssK |
20 | t2583 | 2663712..2664248 [-], 537 | 29142959 | lipoprotein | TssJ |
21 | t2584 | 2664315..2664800 [-], 486 | 29142960 | hypothetical protein | TssD |
22 | t2585 | 2665037..2665462 [-], 426 | 29142961 | hypothetical protein | STY0301 (i) |
23 | t2586 | 2665434..2665835 [-], 402 | 29142962 | hypothetical protein | STY0300 (e) |
24 | t2588 | 2667420..2667962 [-], 543 | 29142963 | hypothetical protein | TssB |
25 | t2589 | 2668026..2668316 [-], 291 | 29142964 | hypothetical protein | |
26 | t2590 | 2668319..2668417 [-], 99 | 29142965 | hypothetical protein | |
27 | t2591 | 2668402..2671065 [-], 2664 | 29142966 | ClpB-like protein | TssH |
28 | t2593 | 2671433..2672335 [+], 903 | 29142968 | hypothetical protein | |
29 | t2594 | 2672322..2673146 [+], 825 | 29142969 | hypothetical protein | TagJ |
30 | t2595 | 2673143..2673637 [+], 495 | 29142970 | hypothetical protein | TssE |
31 | t2597 | 2673653..2675536 [+], 1884 | 29142971 | hypothetical protein | TssF |
32 | t2596 | 2675533..2676528 [+], 996 | 29142972 | hypothetical protein | TssG |
33 | t2598 | 2676539..2676961 [+], 423 | 29142973 | hypothetical protein | TssA |
34 | t2599 | 2676961..2677593 [+], 633 | 29142974 | hypothetical protein | TssA |
35 | t2601 (dnaQ) | 2678123..2678854 [-], 732 | 29142975 | DNA polymerase III subunit epsilon | |
36 | t2602 (rnhA) | 2678918..2679385 [+], 468 | 29142976 | ribonuclease H | |
37 | t2603 | 2679382..2680104 [-], 723 | 29142977 | hypothetical protein | |
38 | t2604 (gloB) | 2680139..2680894 [+], 756 | 29142978 | hydroxyacylglutathione hydrolase | |
39 | t2605 (mltD) | 2680966..2682333 [+], 1368 | 29142979 | membrane-bound lytic murein transglycosylase D | |
40 | t2606 (yafE) | 2682389..2683159 [-], 771 | 29142980 | methyltransferase | |
41 | t2607 (yafD) | 2683237..2684016 [-], 780 | 29142981 | hypothetical protein | |
42 | t2608 | 2684169..2685344 [-], 1176 | 29142982 | drug efflux protein | |
43 | t2609 (yafC) | 2685449..2686363 [+], 915 | 29142983 | transcriptional regulator | |
44 | t2610 (dkgB) | 2686384..2687187 [-], 804 | 29142984 | 2,5-diketo-D-gluconate reductase B | |
|
Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein