I. Summary

SecReT6 ID	450
Strain	Myxococcus fulvus HW-1
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_015711
Location	7852915..7902412
Comment
Function	N/A
T6SS Type	Type i; subtype i1
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	5	1	1	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	LILAB_31950	7852339..7852824 [+], 486	338536015	hypothetical protein
2	LILAB_31955	7852915..7854711 [-], 1797	338536016	OmpA domain-containing protein	TagL
3	LILAB_31960	7854974..7857238 [+], 2265	338536017	Rhs element Vgr family protein	TssI
4	LILAB_31965	7857418..7858002 [+], 585	338536018	hypothetical protein	TssJ
5	LILAB_31970	7857999..7859366 [+], 1368	338536019	hypothetical protein	TssK
6	LILAB_31975	7859382..7860098 [+], 717	338536020	hypothetical protein	TssL
7	LILAB_31980	7860098..7863790 [+], 3693	338536021	hypothetical protein	TssM
8	LILAB_31985	7863798..7864724 [+], 927	338536022	hypothetical protein
9	LILAB_31990	7864817..7866715 [+], 1899	338536023	hypothetical protein	TssA
10	LILAB_31995	7866798..7867292 [+], 495	338536024	hypothetical protein	TssB
11	LILAB_32000	7867318..7868802 [+], 1485	338536025	hypothetical protein	TssC
12	LILAB_32005	7868922..7869413 [+], 492	338536026	hypothetical protein	TssD
13	LILAB_32010	7869496..7869891 [+], 396	338536027	hypothetical protein	TssE
14	LILAB_32015	7869928..7871679 [+], 1752	338536028	hypothetical protein	TssF
15	LILAB_32020	7871715..7872686 [+], 972	338536029	hypothetical protein	TssG
16	LILAB_32025	7872808..7875384 [+], 2577	338536030	ATP-dependent chaperone protein ClpB	TssH
17	LILAB_32030	7875393..7876427 [+], 1035	338536031	putative lipoprotein
18	LILAB_32035	7876578..7876943 [+], 366	338536032	hypothetical protein
19	LILAB_32040	7877007..7877558 [+], 552	338536033	hypothetical protein
20	LILAB_32045	7877581..7878918 [-], 1338	338536034	glucosyl hydrolase family protein
21	LILAB_32050	7879041..7880108 [-], 1068	338536035	sulfate ABC transporter ATP-binding protein
22	LILAB_32055	7880105..7880962 [-], 858	338536036	sulfate ABC transporter permease CysW
23	LILAB_32060	7880959..7881777 [-], 819	338536037	sulfate ABC transporter permease CysT
24	LILAB_32065	7881814..7882824 [-], 1011	338536038	sulfate ABC transporter periplasmic sulfate-binding protein
25	LILAB_32070	7883152..7885746 [+], 2595	338536039	hypothetical protein
26	LILAB_32075	7885878..7889249 [+], 3372	338536040	ClpB family protein	TssH
27	LILAB_32080	7889254..7892667 [+], 3414	338536041	ClpA/B family protein	TssH
28	LILAB_32085	7892669..7894963 [+], 2295	338536042	ClpA/B family protein	TssH
29	LILAB_32090	7895018..7895599 [-], 582	338536043	superoxide dismutase, Fe
30	LILAB_32095	7895633..7896100 [-], 468	338536044	flavin reductase domain-containing protein
31	LILAB_32100	7896298..7898559 [-], 2262	338536045	isoquinoline 1-oxidoreductase subunit beta
32	LILAB_32105	7898570..7899055 [-], 486	338536046	isoquinoline 1-oxidoreductase subunit alpha
33	LILAB_32110	7899028..7899660 [-], 633	338536047	putative lipoprotein
34	LILAB_32115	7899758..7902412 [-], 2655	338536048	ATP-dependent Clp protease, ATP-binding subunit ClpC	TssH
35	LILAB_32120	7902602..7903036 [+], 435	338536049	hypothetical protein
36	LILAB_32125	7903110..7903688 [+], 579	338536050	hypothetical protein
37	LILAB_32130	7903925..7905334 [+], 1410	338536051	EmrB/QacA family drug resistance transporter
38	LILAB_32135	7905360..7906832 [-], 1473	338536052	endoglucanase

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

MXAN_4809

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	LILAB_32005	7868922..7869413 [+], 492	338536026	hypothetical protein	MXAN_4809

Download FASTA format files

Proteins        Genes

N/A

N/A