I. Summary

SecReT6 ID	451
Strain	Pseudomonas putida S16
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_015733
Location	3143375..3173427
Comment
Function	N/A
T6SS Type	Type i; subtype i4b
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	2

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	PPS_2826	3142277..3142744 [-], 468	339487729	hypothetical protein
2	PPS_2827	3142780..3143364 [-], 585	339487730	hypothetical protein
3	PPS_2828	3143375..3145231 [-], 1857	339487731	Rhs element Vgr protein	TssI
4	PPS_2829	3145893..3147401 [+], 1509	339487732	hypothetical protein
5	PPS_2830	3147515..3147694 [+], 180	339487733	hypothetical protein
6	PPS_2831	3148158..3148334 [+], 177	339487734	hypothetical protein
7	PPS_2832	3148740..3148967 [+], 228	339487735	hypothetical protein
8	PPS_2833	3150003..3150512 [+], 510	339487736	hypothetical protein
9	PPS_2834	3150821..3151993 [-], 1173	339487737	ADP-ribosyl-(dinitrogen reductase) hydrolase
10	PPS_2835	3152711..3153475 [+], 765	339487738	hypothetical protein
11	PPS_2836	3153504..3154079 [+], 576	339487739	type VI secretion protein	TssB
12	PPS_2837	3154094..3155596 [+], 1503	339487740	EvpB family type VI secretion protein	TssC
13	PPS_2838	3155623..3156105 [+], 483	339487741	type VI secretion system lysozyme-like protein	TssE
14	PPS_2839	3156105..3157925 [+], 1821	339487742	type VI secretion protein	TssF
15	PPS_2840	3157973..3158959 [+], 987	339487743	type VI secretion protein	TssG
16	PPS_2841	3158956..3161541 [+], 2586	339487744	type VI secretion ATPase	TssH
17	PPS_2842	3161566..3162288 [+], 723	339487745	putative lipoprotein	TssJ
18	PPS_2843	3162285..3163628 [+], 1344	339487746	type VI secretion protein	TssK
19	PPS_2844	3163625..3164341 [+], 717	339487747	hypothetical protein	TssL
20	PPS_2845	3164372..3168175 [+], 3804	339487748	ImcF domain-containing protein	TssM
21	PPS_2846	3168172..3169080 [+], 909	339487749	hypothetical protein
22	PPS_2847	3169077..3171572 [+], 2496	339487750	OmpA/MotB domain-containing protein	TssM
23	PPS_2848	3171716..3172234 [+], 519	339487751	Hcp1 family type VI secretion system effector	TssD
24	PPS_2849	3172330..3173427 [+], 1098	339487752	ImpA family type VI secretion-associated protein	TssA
25	PPS_2850	3173582..3176098 [+], 2517	339487753	excinuclease ABC subunit A
26	PPS_2851	3176266..3176859 [+], 594	339487754	hypothetical protein
27	PPS_2852	3176977..3177852 [-], 876	339487755	auxin efflux carrier

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

Psyr_4965

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	PPS_2848	3171716..3172234 [+], 519	339487751	Hcp1 family type VI secretion system effector	Psyr_4965

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Proteins        Genes

N/A

N/A