I. Summary
SecReT6 ID451 insolico
StrainPseudomonas putida S16
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1PPS_28263142277..3142744 [-], 468339487729hypothetical protein 
2PPS_28273142780..3143364 [-], 585339487730hypothetical protein 
3PPS_28283143375..3145231 [-], 1857339487731Rhs element Vgr protein  TssI
4PPS_28293145893..3147401 [+], 1509339487732hypothetical protein 
5PPS_28303147515..3147694 [+], 180339487733hypothetical protein 
6PPS_28313148158..3148334 [+], 177339487734hypothetical protein 
7PPS_28323148740..3148967 [+], 228339487735hypothetical protein 
8PPS_28333150003..3150512 [+], 510339487736hypothetical protein 
9PPS_28343150821..3151993 [-], 1173339487737ADP-ribosyl-(dinitrogen reductase) hydrolase 
10PPS_28353152711..3153475 [+], 765339487738hypothetical protein 
11PPS_28363153504..3154079 [+], 576339487739type VI secretion protein  TssB
12PPS_28373154094..3155596 [+], 1503339487740EvpB family type VI secretion protein  TssC
13PPS_28383155623..3156105 [+], 483339487741type VI secretion system lysozyme-like protein  TssE
14PPS_28393156105..3157925 [+], 1821339487742type VI secretion protein  TssF
15PPS_28403157973..3158959 [+], 987339487743type VI secretion protein  TssG
16PPS_28413158956..3161541 [+], 2586339487744type VI secretion ATPase  TssH
17PPS_28423161566..3162288 [+], 723339487745putative lipoprotein  TssJ
18PPS_28433162285..3163628 [+], 1344339487746type VI secretion protein  TssK
19PPS_28443163625..3164341 [+], 717339487747hypothetical protein  TssL
20PPS_28453164372..3168175 [+], 3804339487748ImcF domain-containing protein  TssM
21PPS_28463168172..3169080 [+], 909339487749hypothetical protein 
22PPS_28473169077..3171572 [+], 2496339487750OmpA/MotB domain-containing protein  TssM
23PPS_28483171716..3172234 [+], 519339487751Hcp1 family type VI secretion system effector  TssD
24PPS_28493172330..3173427 [+], 1098339487752ImpA family type VI secretion-associated protein  TssA
25PPS_28503173582..3176098 [+], 2517339487753excinuclease ABC subunit A 
26PPS_28513176266..3176859 [+], 594339487754hypothetical protein 
27PPS_28523176977..3177852 [-], 876339487755auxin efflux carrier 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1PPS_28483171716..3172234 [+], 519339487751Hcp1 family type VI secretion system effector Psyr_4965

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Proteins        Genes