SecReT6
I. Summary
SecReT6 ID452 insolico
StrainPseudomonas stutzeri ATCC 17588 = LMG 11199
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_015740
Location121942..131930
Comment
FunctionN/A
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number001100000
ComponentTssGTssJTssKTssM
Number0110
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1PSTAB_0103118152..118979 [-], 828339492180putative transposase for insertion element 
2PSTAB_0104 (insC)118976..119281 [-], 306339492181putative transposase 
3PSTAB_0105119430..120821 [-], 1392339492182hypothetical protein 
4PSTAB_0106120809..121429 [-], 621339492183hypothetical protein 
5PSTAB_0107121457..121933 [-], 477339492184hypothetical protein 
6PSTAB_0108121942..123966 [-], 2025339492185Rhs element Vgr protein  TssI
7PSTAB_0109123988..124959 [-], 972339492186protein kinase 
8PSTAB_0110124956..125687 [-], 732339492187protein phosphatase 2C domain-containing protein 
9PSTAB_0111129227..130108 [-], 882339492188hypothetical protein  TssL
10PSTAB_0112130114..131445 [-], 1332339492189hypothetical protein  TssK
11PSTAB_0113131448..131930 [-], 483339492190hypothetical protein  TssJ
12PSTAB_0114131935..133131 [-], 1197339492191FHA domain-containing protein 
13PSTAB_0115133152..133286 [-], 135339492192hypothetical protein 
14PSTAB_0116134093..135073 [+], 981339492193transposase 
15PSTAB_0117 (pepQ)135256..136467 [-], 1212339492194creatinase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
PSPTO_5435

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1PSTAB_0169190002..190520 [+], 519339492246hypothetical protein PSPTO_5435

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Proteins        Genes
N/A
N/A