I. Summary

SecReT6 ID	454
Strain	Salmonella bongori NCTC 12419
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_015761
Location	1350271..1368872
Comment
Function	N/A
T6SS Type	Type i; subtype i4a
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	0	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	SBG_1229	1345830..1346879 [-], 1050	339999216	zinc-type alcohol dehydrogenase protein
2	SBG_1230	1347967..1348926 [-], 960	339999217	pathogenicity island protein
3	SBG_1231	1349099..1349827 [-], 729	339999218	transcriptional regulator
4	SBG_1232	1349885..1350274 [-], 390	339999219	hypothetical protein
5	SBG_1233	1350271..1351197 [-], 927	339999220	type VI secretion protein ImpA	TssA
6	SBG_1234	1351208..1354747 [-], 3540	339999221	type VI secretion protein IcmF	TssM
7	SBG_1235	1354744..1355490 [-], 747	339999222	type VI secretion protein DotU	TssL
8	SBG_1236	1355480..1356811 [-], 1332	339999223	type VI secretion protein	TssK
9	SBG_1237	1356813..1357283 [-], 471	339999224	hypothetical protein
10	SBG_1238	1357614..1358165 [+], 552	339999225	hypothetical protein	TssB
11	SBG_1239	1358186..1359667 [+], 1482	339999226	type VI secretion protein VipB	TssC
12	SBG_1240	1359686..1360162 [+], 477	339999227	type VI secretion effector protein Hcp	TssD
13	SBG_1241	1360175..1360552 [+], 378	339999228	type VI secretion protein gp25	TssE
14	SBG_1242	1360571..1362292 [+], 1722	339999229	type VI secretion protein VasA	TssF
15	SBG_1243	1362346..1363194 [+], 849	339999230	type VI secretion protein SciN	TssG
16	SBG_1244	1363185..1365698 [+], 2514	339999231	type VI secretion protein ClpV	TssH
17	SBG_1245	1365722..1366738 [+], 1017	339999232	hypothetical protein
18	SBG_1246	1366908..1368872 [+], 1965	339999233	type VI secretion protein VgrG	TssI
19	SBG_1247	1368872..1369393 [+], 522	339999234	hypothetical protein
20	SBG_1248 (ydhE)	1369794..1371167 [-], 1374	339999235	integral membrane protein
21	SBG_1249 (ribE)	1371384..1372025 [+], 642	339999236	riboflavin synthase alpha chain
22	SBG_1250 (cfa)	1372069..1373217 [-], 1149	339999237	cyclopropane-fatty-acyl-phospholipid synthase

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

Hcp

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	SBG_1240	1359686..1360162 [+], 477	339999227	type VI secretion effector protein Hcp	Hcp

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Proteins        Genes

N/A

N/A