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III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | SBG_1229 | 1345830..1346879 [-], 1050 | 339999216 | zinc-type alcohol dehydrogenase protein | |
2 | SBG_1230 | 1347967..1348926 [-], 960 | 339999217 | pathogenicity island protein | |
3 | SBG_1231 | 1349099..1349827 [-], 729 | 339999218 | transcriptional regulator | |
4 | SBG_1232 | 1349885..1350274 [-], 390 | 339999219 | hypothetical protein | |
5 | SBG_1233 | 1350271..1351197 [-], 927 | 339999220 | type VI secretion protein ImpA | TssA |
6 | SBG_1234 | 1351208..1354747 [-], 3540 | 339999221 | type VI secretion protein IcmF | TssM |
7 | SBG_1235 | 1354744..1355490 [-], 747 | 339999222 | type VI secretion protein DotU | TssL |
8 | SBG_1236 | 1355480..1356811 [-], 1332 | 339999223 | type VI secretion protein | TssK |
9 | SBG_1237 | 1356813..1357283 [-], 471 | 339999224 | hypothetical protein | |
10 | SBG_1238 | 1357614..1358165 [+], 552 | 339999225 | hypothetical protein | TssB |
11 | SBG_1239 | 1358186..1359667 [+], 1482 | 339999226 | type VI secretion protein VipB | TssC |
12 | SBG_1240 | 1359686..1360162 [+], 477 | 339999227 | type VI secretion effector protein Hcp | TssD |
13 | SBG_1241 | 1360175..1360552 [+], 378 | 339999228 | type VI secretion protein gp25 | TssE |
14 | SBG_1242 | 1360571..1362292 [+], 1722 | 339999229 | type VI secretion protein VasA | TssF |
15 | SBG_1243 | 1362346..1363194 [+], 849 | 339999230 | type VI secretion protein SciN | TssG |
16 | SBG_1244 | 1363185..1365698 [+], 2514 | 339999231 | type VI secretion protein ClpV | TssH |
17 | SBG_1245 | 1365722..1366738 [+], 1017 | 339999232 | hypothetical protein | |
18 | SBG_1246 | 1366908..1368872 [+], 1965 | 339999233 | type VI secretion protein VgrG | TssI |
19 | SBG_1247 | 1368872..1369393 [+], 522 | 339999234 | hypothetical protein | |
20 | SBG_1248 (ydhE) | 1369794..1371167 [-], 1374 | 339999235 | integral membrane protein | |
21 | SBG_1249 (ribE) | 1371384..1372025 [+], 642 | 339999236 | riboflavin synthase alpha chain | |
22 | SBG_1250 (cfa) | 1372069..1373217 [-], 1149 | 339999237 | cyclopropane-fatty-acyl-phospholipid synthase | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein