SecReT6
I. Summary
SecReT6 ID455 insolico
StrainCollimonas fungivorans Ter331
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_015856
Location83424..116204
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111211111
ComponentTssGTssJTssKTssM
Number1111
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1CFU_005479477..80256 [+], 780340785251putative lipoprotein 
2CFU_005580295..81155 [-], 861340785252Abortive infection protein 
3CFU_005681211..82122 [-], 912340785253hypothetical protein 
4CFU_005782270..83109 [+], 840340785254peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysin 
5CFU_005883424..87356 [+], 3933340785255putative transmembrane protein  TssM
6CFU_005987353..88339 [+], 987340785256hypothetical protein 
7CFU_006088343..89125 [+], 783340785257hypothetical protein  TagL
8CFU_0061 (impA)89133..90302 [-], 1170340785258hypothetical protein  TssA
9CFU_006290347..91135 [+], 789340785259TPR repeat protein 
10CFU_0063 (vrgS)91425..93674 [+], 2250340785260hypothetical protein  TssI
11CFU_006493698..95344 [+], 1647340785261hypothetical protein 
12CFU_006595358..99752 [+], 4395340785262hypothetical protein 
13CFU_006699746..100624 [+], 879340785263hypothetical protein 
14CFU_0067100730..101095 [-], 366340785264hypothetical protein 
15CFU_0068 (clpB)101108..103807 [-], 2700340785265ClpB protein  TssH
16CFU_0069 (impH)103832..104914 [-], 1083340785266hypothetical protein  TssG
17CFU_0070104878..106722 [-], 1845340785267protein ImpG/VasA  TssF
18CFU_0071106724..107215 [-], 492340785268hypothetical protein  TssE
19CFU_0072107278..107769 [-], 492340785269putative cytoplasmic protein USSDB7A  TssD
20CFU_0073 (impC)107793..109280 [-], 1488340785270hypothetical protein  TssC
21CFU_0074 (impB)109282..109791 [-], 510340785271hypothetical protein  TssB
22CFU_0075109857..110453 [-], 597340785272putative lipoprotein 
23CFU_0076110715..111314 [+], 600340785273putative transmembrane protein  TssJ
24CFU_0077111370..112728 [+], 1359340785274hypothetical protein  TssK
25CFU_0078112725..113501 [+], 777340785275putative transmembrane protein  TssL
26CFU_0079113553..116204 [+], 2652340785276Rhs element Vgr protein  TssI
27CFU_0080116176..117408 [+], 1233340785277hypothetical protein 
28CFU_0081119167..119574 [-], 408340785278glyoxalase/bleomycin resistance protein/dioxygenase 
29CFU_0082 (maoC)119623..120189 [-], 567340785279acyl dehydratase MaoC 
30CFU_0083120387..121007 [+], 621340785280putative lipoprotein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
BTH_II0090 , BTH_I3225

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1CFU_28053331054..3333354 [-], 2301340787989putative transmembrane protein BTH_II0090
2CFU_28063333374..3336175 [-], 2802340787990putative Vgr-like protein BTH_I3225

Download FASTA format files
Proteins        Genes
N/A
N/A

Genomics & Bioinformatics Group in MML, SJTU