I. Summary

SecReT6 ID	460
Strain	Xanthomonas axonopodis pv. citrumelo F1
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_016010
Location	2402560..2431629
Comment
Function	N/A
T6SS Type	Type i; subtype i3
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	0	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	XACM_2094	2398956..2399990 [+], 1035	346724995	dehydrogenase
2	XACM_2095	2400306..2400584 [-], 279	346724996	hypothetical protein
3	XACM_2096	2400914..2401876 [-], 963	346724997	hypothetical protein
4	XACM_2097	2402003..2402419 [-], 417	346724998	hypothetical protein
5	XACM_2098	2402560..2403066 [+], 507	346724999	hypothetical protein	TssB
6	XACM_2099	2403071..2404579 [+], 1509	346725000	hypothetical protein	TssC
7	XACM_2100	2404679..2405182 [+], 504	346725001	hemolysin-coregulated protein	TssD
8	XACM_2101	2405215..2406048 [+], 834	346725002	Protein of avirulence locus involved in temperature-dependent protein secretion	TagJ
9	XACM_2102	2406036..2406539 [+], 504	346725003	hypothetical protein	TssE
10	XACM_2103	2406542..2408419 [+], 1878	346725004	hypothetical protein	TssF
11	XACM_2104	2408383..2409393 [+], 1011	346725005	hypothetical protein	TssG
12	XACM_2105 (clpB1)	2409426..2412164 [+], 2739	346725006	ATP-dependent Clp protease subunit	TssH
13	XACM_2106	2412817..2413365 [+], 549	346725007	hypothetical protein
14	XACM_2107	2413573..2414115 [+], 543	346725008	hypothetical protein
15	XACM_2108	2414488..2414724 [+], 237	346725009	hypothetical protein
16	XACM_2109	2414751..2414924 [+], 174	346725010	hypothetical protein
17	XACM_2110	2415105..2415674 [+], 570	346725011	hypothetical protein
18	XACM_2111	2415850..2417787 [+], 1938	346725012	hypothetical protein	TssI
19	XACM_2112	2417796..2418335 [+], 540	346725013	hypothetical protein
20	XACM_2113	2418332..2419717 [+], 1386	346725014	FHA-domain-containing protein	Fha
21	XACM_2114	2419714..2421051 [+], 1338	346725015	hypothetical protein	TssK
22	XACM_2115	2421053..2422369 [+], 1317	346725016	hypothetical protein	TssL
23	XACM_2116	2422373..2425831 [+], 3459	346725017	hypothetical protein	TssM
24	XACM_2117	2425828..2426490 [+], 663	346725018	hypothetical protein
25	XACM_2118	2426487..2427209 [+], 723	346725019	phosphoprotein phosphatase
26	XACM_2119	2427206..2430109 [+], 2904	346725020	serine/threonine kinase
27	XACM_2120	2430106..2430432 [+], 327	346725021	hypothetical protein
28	XACM_2121	2430601..2431629 [-], 1029	346725022	hypothetical protein	TssA
29	XACM_2122	2431638..2432609 [-], 972	346725023	LysR family transcriptional regulator
30	XACM_2123 (virA)	2432723..2435155 [-], 2433	346725024	two-component VirA-like sensor kinase
31	XACM_2124	2435179..2436171 [-], 993	346725025	Cytochrome c peroxidase

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

N/A

N/A

N/A