 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | EC042_RS24130 (hha) | 4848505..4848717 [+], 213 | 446375476 | hemolysin expression modulator Hha | |
2 | EC042_RS24135 | 4849334..4849903 [+], 570 | 446142872 | inovirus Gp2 family protein | |
3 | EC042_RS30730 | 4849941..4850099 [+], 159 | 446415670 | hypothetical protein | |
4 | EC042_RS24140 | 4850071..4850454 [+], 384 | 446193167 | hypothetical protein | |
5 | EC042_RS24145 | 4850444..4850863 [+], 420 | 485761816 | hypothetical protein | |
6 | EC042_RS24150 | 4850869..4851051 [+], 183 | 447139057 | hypothetical protein | |
7 | EC042_RS24155 | 4851172..4851795 [+], 624 | 447183010 | hypothetical protein | |
8 | EC042_RS24160 | 4851891..4852124 [+], 234 | 446046326 | hypothetical protein | |
9 | EC042_RS24165 | 4852177..4852368 [-], 192 | 447210540 | DUF4222 domain-containing protein | |
10 | EC042_RS24170 (tssB) | 4852875..4853372 [+], 498 | 446021084 | type VI secretion system contractile sheath small subunit | |
11 | EC042_RS24175 (tssC) | 4853394..4854938 [+], 1545 | 446852935 | type VI secretion system contractile sheath large subunit | |
12 | EC042_RS24180 (tssK) | 4854954..4856291 [+], 1338 | 446631292 | type VI secretion system baseplate subunit TssK | |
13 | EC042_RS24185 | 4856288..4856941 [+], 654 | 446962789 | type VI secretion system protein TssL, short form | |
14 | EC042_RS24190 | 4856944..4858674 [+], 1731 | 446480629 | OmpA family protein | |
15 | EC042_RS24195 (hcp) | 4858680..4859171 [+], 492 | 446930057 | type VI secretion system effector Hcp | |
16 | EC042_RS24200 (tssH) | 4859340..4861997 [+], 2658 | 446353791 | type VI secretion system ATPase TssH | |
17 | EC042_RS24205 | 4861994..4862560 [+], 567 | 446070506 | hypothetical protein | |
18 | EC042_RS28850 | 4862554..4863096 [+], 543 | 485781044 | hypothetical protein | |
19 | EC042_RS24215 (vgrG) | 4863083..4865608 [+], 2526 | 446977247 | type VI secretion system tip protein VgrG | |
20 | EC042_RS24220 (tle1) | 4865605..4867287 [+], 1683 | 446092701 | T6SS effector phospholipase Tle1-EAEC | |
21 | EC042_RS24225 (tli1) | 4867307..4867984 [+], 678 | 446118504 | T6SS immunity phospholipase A1-binding lipoprotein Tli1-EAEC | |
22 | EC042_RS24230 (tli1) | 4868128..4868805 [+], 678 | 446118503 | T6SS immunity phospholipase A1-binding lipoprotein Tli1-EAEC | |
23 | EC042_RS24235 | 4868837..4869103 [+], 267 | 445955555 | PAAR domain-containing protein | |
24 | EC042_RS24240 | 4869107..4870255 [+], 1149 | 485781045 | hypothetical protein | |
25 | EC042_RS24245 | 4870248..4873637 [+], 3390 | 446959832 | type VI secretion protein VasK | |
26 | EC042_RS24250 (tssA) | 4873637..4875235 [+], 1599 | 446068660 | type VI secretion system protein TssA | |
27 | EC042_RS24255 | 4875237..4875929 [+], 693 | 446037502 | hypothetical protein | |
28 | EC042_RS24260 (tssF) | 4875937..4877700 [+], 1764 | 446264608 | type VI secretion system baseplate subunit TssF | |
29 | EC042_RS24265 (tssG) | 4877655..4878755 [+], 1101 | 446475927 | type VI secretion system baseplate subunit TssG | |
30 | EC042_RS24270 (tssJ) | 4878736..4879272 [+], 537 | 446897213 | type VI secretion system lipoprotein TssJ | |
31 | EC042_RS24275 (tssE) | 4879275..4879706 [+], 432 | 447060676 | type VI secretion system baseplate subunit TssE | |
32 | EC042_RS24280 | 4879863..4880264 [+], 402 | 485781047 | hypothetical protein | |
33 | EC042_RS24285 | 4880420..4881664 [+], 1245 | 446819776 | GIY-YIG nuclease family protein | |
34 | EC042_RS24290 | 4881900..4883645 [+], 1746 | 586706166 | AAA family ATPase | |
35 | EC042_RS24300 | 4884070..4885437 [+], 1368 | 446122356 | type VI secretion system ImpA family N-terminal domain-containing protein | |
36 | EC042_RS24305 | 4885652..4886212 [+], 561 | 446508647 | hypothetical protein | |
37 | EC042_RS24310 | 4886215..4887045 [+], 831 | 446293040 | hypothetical protein | |
38 | EC042_RS24315 | 4887086..4888318 [+], 1233 | 447127386 | phosphoadenosine phosphosulfate reductase | |
39 | EC042_RS24320 | 4888303..4888947 [+], 645 | 446425008 | ParB N-terminal domain-containing protein | |
40 | EC042_RS24325 | 4889026..4889295 [+], 270 | 446148662 | PerC family transcriptional regulator | |
41 | EC042_RS24330 | 4889316..4889960 [+], 645 | 485761812 | hypothetical protein | |
42 | EC042_RS24335 | 4890026..4890349 [+], 324 | 485761811 | hypothetical protein | |
|
Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein