SecReT6
I. Summary
SecReT6 ID471 insolico
StrainFrancisella tularensis subsp. holarctica OSU18
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_008369
Location1101418..1122902
Comment
FunctionN/A
T6SS TypeType ii (Type FPI)
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentPdpAPdpBIglEVgrGIglFIglGIglHDotUIglI
Number111111111
ComponentIglJPdpCPdpEIglDIglCIglBIglAPdpD
Number11111110
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1FTH_1129 (iglA1)1101418..1102008 [+], 591115314909intracellular growth locus A protein  IglA
2FTH_1130 (iglB1)1101998..1103542 [+], 1545115314910intracellular growth locus B protein  IglB
3FTH_1131 (iglC1)1103559..1104188 [+], 630115314911intracellular growth locus C protein  IglC
4FTH_1132 (iglD1)1104200..1105405 [+], 1206115314912intracellular growth locus D protein  IglD
5FTH_11331105412..1105987 [-], 576115314913hypothetical protein  PdpE
6FTH_1134 (pdpC1)1106005..1109991 [-], 3987115314914protein PdpC  PdpC
7FTH_11351110031..1110804 [-], 774115314915hypothetical protein  IglJ
8FTH_11361110770..1111921 [-], 1152115314916hypothetical protein  IglI
9FTH_11371111943..1112566 [-], 624115314917hypothetical protein  DotU
10FTH_11381112579..1114009 [-], 1431115314918hypothetical protein  IglH
11FTH_11391114022..1114543 [-], 522115314919hypothetical protein  IglG
12FTH_11401114611..1116275 [-], 1665115314920hypothetical protein  IglF
13FTH_11411116280..1116774 [-], 495115314921hypothetical protein  VgrG
14FTH_11421116787..1117164 [-], 378115314922hypothetical protein  IglE
15FTH_1143 (pdpB1)1117154..1120435 [-], 3282115314923hypothetical protein  PdpB
16FTH_1144 (pdpA1)1120440..1122902 [-], 2463115314924hypothetical protein  PdpA
 

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
FTL_0118 , FTT_1347

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1FTH_11361110770..1111921 [-], 1152115314916hypothetical protein FTL_0118
2FTH_11411116280..1116774 [-], 495115314921hypothetical protein FTT_1347

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Proteins        Genes
N/A
N/A