SecReT6
I. Summary
SecReT6 ID472 insolico
StrainFrancisella tularensis subsp. tularensis WY96-3418
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_009257
Location30375..55490
Comment
FunctionN/A
T6SS TypeType ii (Type FPI)
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentPdpAPdpBIglEVgrGIglFIglGIglHDotUIglI
Number111111111
ComponentIglJPdpCPdpEIglDIglCIglBIglAPdpD
Number11111111
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1FTW_003327236..28116 [+], 881134301192transposase ISFtu1 
2FTW_0037 (pdpD1)30375..33962 [+], 3588134301193pathogenicity determinant protein D, pdpD  PdpD
3FTW_0038 (iglA1)34043..34597 [+], 555134301194intracellular growth locus, igl A  IglA
4FTW_0039 (iglB1)34611..36131 [+], 1521134301195intracellular growth locus B, IglB  IglB
5FTW_0040 (iglC1)36142..36777 [+], 636134301196intracellular growth locus iglC  IglC
6FTW_0041 (iglD1)36798..37994 [+], 1197134301197intracellular growth locus iglD  IglD
7FTW_004238001..38576 [-], 576134301198hypothetical protein  PdpE
8FTW_0043 (pdpC1)38594..42580 [-], 3987134301199pathogenicity determinant protein pdpC  PdpC
9FTW_004442620..43336 [-], 717134301200hypothetical protein  IglJ
10FTW_004543359..44510 [-], 1152134301201hypothetical protein  IglI
11FTW_004644532..45155 [-], 624134301202hypothetical protein  DotU
12FTW_004745168..46598 [-], 1431134301203hypothetical protein  IglH
13FTW_004846611..47132 [-], 522134301204hypothetical protein  IglG
14FTW_004947133..48863 [-], 1731134301205hypothetical protein  IglF
15FTW_005048868..49362 [-], 495134301206hypothetical protein  VgrG
16FTW_005149375..49752 [-], 378134301207lipoprotein  IglE
17FTW_0052 (pdpB1)49742..53023 [-], 3282134301208pathogenicity deteminant protein pdpB1  PdpB
18FTW_0053 (pdpA1)53028..55490 [-], 2463134301209pathogenicity deteminant protein pdpA1  PdpA
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
FTL_0118 , FTT_1347

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1FTW_004543359..44510 [-], 1152134301201hypothetical protein FTL_0118
2FTW_005048868..49362 [-], 495134301206hypothetical protein FTT_1347

Download FASTA format files
Proteins        Genes
N/A
N/A