SecReT6
I. Summary
SecReT6 ID475 insolico
StrainFrancisella tularensis subsp. holarctica FTNF002-00
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_009749
Location1097858..1119342
Comment
FunctionN/A
T6SS TypeType ii (Type FPI)
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentPdpAPdpBIglEVgrGIglFIglGIglHDotUIglI
Number111001110
ComponentIglJPdpCPdpEIglDIglCIglBIglAPdpD
Number11011110
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1FTA_12151095353..1096233 [+], 881169656627transposase ISFtu1 
2FTA_12171096234..1097106 [-], 873156502584hypothetical protein 
3FTA_1220 (iglAII)1097858..1098448 [+], 591169656628intracellular growth locus AII  IglA
4FTA_1221 (iglB)1098438..1099982 [+], 1545169656629intracellular growth locus BII  IglB
5FTA_1222 (iglCII)1099993..1100628 [+], 636156502589intracellular growth locus CII  IglC
6FTA_1223 (iglDII)1100640..1101845 [+], 1206169656630intracellular growth locus DII  IglD
7FTA_1225 (pdpCII)1102445..1106431 [-], 3987156502592pathogenicity determinant protein PdpC  PdpC
8FTA_12261106471..1107244 [-], 774156502593hypothetical protein  IglJ
9FTA_12281108383..1109006 [-], 624156502595hypothetical protein  DotU
10FTA_12291109019..1110449 [-], 1431156502596hypothetical protein  IglH
11FTA_12301110462..1110983 [-], 522169656631hypothetical protein  IglG
12FTA_12331113227..1113604 [-], 378156502600putative lipoprotein  IglE
13FTA_1234 (pdpBII)1113594..1116875 [-], 3282156502601pathogenicity deteminant protein PdpB  PdpB
14FTA_1235 (pdpAII)1116880..1119342 [-], 2463156502602pathogenicity deteminant protein PdpA  PdpA
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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