SecReT6
I. Summary
SecReT6 ID476 insolico
StrainFrancisella philomiragia subsp. philomiragia ATCC 25017
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_010336
Location1486538..1507202
Comment
FunctionN/A
T6SS TypeType ii (Type FPI)
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentPdpAPdpBIglEVgrGIglFIglGIglHDotUIglI
Number111111111
ComponentIglJPdpCPdpEIglDIglCIglBIglAPdpD
Number10011111
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Fphi_13601482468..1483925 [-], 1458167627586alpha,alpha-trehalase 
2Fphi_13611483928..1485136 [-], 1209167627587fucose permease-like protein 
3Fphi_1362 (anmK)1485309..1486457 [+], 1149167627588anhydro-N-acetylmuramic acid kinase 
4Fphi_13631486538..1490272 [+], 3735167627589hypothetical protein  PdpD
5Fphi_13641490356..1490919 [+], 564167627590intracellular growth locus protein A  IglA
6Fphi_13651490932..1492452 [+], 1521167627591intracellular growth locus subunit B  IglB
7Fphi_13661492470..1493099 [+], 630167627592intracellular growth locus subunit C  IglC
8Fphi_13671493123..1494319 [+], 1197167627593intracellular growth locus protein D  IglD
9Fphi_13681494332..1495051 [-], 720167627594hypothetical protein  IglJ
10Fphi_13691495069..1496262 [-], 1194167627595hypothetical protein  IglI
11Fphi_13701496277..1496897 [-], 621167627596hypothetical protein  DotU
12Fphi_13711496912..1498339 [-], 1428167627597hypothetical protein  IglH
13Fphi_13721498351..1498872 [-], 522167627598hypothetical protein  IglG
14Fphi_13731498872..1500587 [-], 1716167627599hypothetical protein  IglF
15Fphi_13741500593..1501087 [-], 495167627600hypothetical protein  VgrG
16Fphi_13751501100..1501477 [-], 378167627601hypothetical protein  IglE
17Fphi_13761501467..1504736 [-], 3270167627602hypothetical protein  PdpB
18Fphi_13771504740..1507202 [-], 2463167627603hypothetical protein  PdpA
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
FTN_1312

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1Fphi_13741500593..1501087 [-], 495167627600hypothetical protein FTN_1312

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Proteins        Genes
N/A
N/A