SecReT6
I. Summary
SecReT6 ID477 insolico
StrainFrancisella tularensis subsp. mediasiatica FSC147
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_010677
Location1161310..1186564
Comment
FunctionN/A
T6SS TypeType ii (Type FPI)
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentPdpAPdpBIglEVgrGIglFIglGIglHDotUIglI
Number111111111
ComponentIglJPdpCPdpEIglDIglCIglBIglAPdpD
Number11111111
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1FTM_1086 (pdpA1)1161310..1163772 [+], 2463187931778hypothetical protein  PdpA
2FTM_1087 (pdpB1)1163777..1167058 [+], 3282187931779hypothetical protein  PdpB
3FTM_10881167048..1167425 [+], 378187931780lipoprotein  IglE
4FTM_10891167438..1167932 [+], 495187931781hypothetical protein  VgrG
5FTM_10901167937..1169601 [+], 1665187931782hypothetical protein  IglF
6FTM_10911169669..1170190 [+], 522187931783hypothetical protein  IglG
7FTM_10921170203..1171633 [+], 1431187931784hypothetical protein  IglH
8FTM_10931171646..1172263 [+], 618187931785hypothetical protein  DotU
9FTM_10941172285..1173436 [+], 1152187931786hypothetical protein  IglI
10FTM_10951173402..1174175 [+], 774187931787hypothetical protein  IglJ
11FTM_1096 (pdpC1)1174215..1178201 [+], 3987187931788PdpC  PdpC
12FTM_10971178219..1178794 [+], 576187931789hypothetical protein  PdpE
13FTM_1098 (iglD1)1178801..1179997 [-], 1197187931790intracellular growth locus protein D  IglD
14FTM_1099 (iglC1)1180018..1180647 [-], 630187931791intracellular growth locus C protein  IglC
15FTM_1100 (iglB1)1180664..1182184 [-], 1521187931792intracellular growth locus protein B  IglB
16FTM_1101 (iglA1)1182198..1182752 [-], 555187931793intracellular growth locus protein A  IglA
17FTM_1102 (pdpD1)1182833..1186564 [-], 3732187931794hypothetical protein  PdpD
18FTM_1103 (anmK)1186795..1187778 [-], 984187931795anhydro-N-acetylmuramic acid kinase 
19FTM_11061190083..1190505 [-], 423187931796lipoprotein 
20FTM_1107 (nadE)1190609..1191358 [-], 750187931797NAD+ synthetase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
FTT_1347 , FTL_0118

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1FTM_10891167438..1167932 [+], 495187931781hypothetical protein FTT_1347
2FTM_10941172285..1173436 [+], 1152187931786hypothetical protein FTL_0118

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Proteins        Genes
N/A
N/A