SecReT6
I. Summary
SecReT6 ID478 insolico
StrainFrancisella tularensis subsp. mediasiatica FSC147
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_010677
Location1825027..1850281
Comment
FunctionN/A
T6SS TypeType ii (Type FPI)
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentPdpAPdpBIglEVgrGIglFIglGIglHDotUIglI
Number111111111
ComponentIglJPdpCPdpEIglDIglCIglBIglAPdpD
Number11111111
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1FTM_1696 (pdpA2)1825027..1827489 [+], 2463187932273hypothetical protein  PdpA
2FTM_1697 (pdpB2)1827494..1830775 [+], 3282187932274hypothetical protein  PdpB
3FTM_16981830765..1831142 [+], 378187932275lipoprotein  IglE
4FTM_16991831155..1831649 [+], 495187932276hypothetical protein  VgrG
5FTM_17001831654..1833318 [+], 1665187932277hypothetical protein  IglF
6FTM_17011833386..1833907 [+], 522187932278hypothetical protein  IglG
7FTM_17021833920..1835350 [+], 1431187932279hypothetical protein  IglH
8FTM_17031835363..1835980 [+], 618187932280hypothetical protein  DotU
9FTM_17041836002..1837153 [+], 1152187932281hypothetical protein  IglI
10FTM_17051837119..1837892 [+], 774187932282hypothetical protein  IglJ
11FTM_1706 (pdpC2)1837932..1841918 [+], 3987187932283PdpC  PdpC
12FTM_17071841936..1842511 [+], 576187932284hypothetical protein  PdpE
13FTM_1708 (iglD2)1842518..1843714 [-], 1197187932285intracellular growth locus protein D  IglD
14FTM_1709 (iglC2)1843735..1844364 [-], 630187932286intracellular growth locus protein C  IglC
15FTM_1710 (iglB2)1844381..1845901 [-], 1521187932287intracellular growth locus protein B  IglB
16FTM_1711 (iglA2)1845915..1846469 [-], 555187932288intracellular growth locus protein A  IglA
17FTM_1712 (pdpD2)1846550..1850281 [-], 3732187932289hypothetical protein  PdpD
18FTM_17161853681..1854889 [+], 1209187932290metabolite:H+ symporter (MHS) family protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
FTT_1347 , FTL_0118

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1FTM_16991831155..1831649 [+], 495187932276hypothetical protein FTT_1347
2FTM_17041836002..1837153 [+], 1152187932281hypothetical protein FTL_0118

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Proteins        Genes
N/A
N/A