SecReT6
I. Summary
SecReT6 ID479 insolico
StrainFrancisella sp. TX077308
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_015696
Location1027281..1047944
Comment
FunctionN/A
T6SS TypeType ii (Type FPI)
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentPdpAPdpBIglEVgrGIglFIglGIglHDotUIglI
Number111111111
ComponentIglJPdpCPdpEIglDIglCIglBIglAPdpD
Number10011111
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1F7308_09981023211..1024668 [-], 1458337755014Trehalase; Periplasmic trehalase 
2F7308_09991024671..1025879 [-], 1209337755015trehalose permease, MFS family, FucP subfamily 
3F7308_10001026055..1027200 [+], 1146337755016anhydro-N-acetylmuramic acid kinase 
4F7308_10011027281..1031018 [+], 3738337755017Pathogenicity determinant protein D  PdpD
5F7308_10021031102..1031665 [+], 564337755018hypothetical protein  IglA
6F7308_10031031678..1033198 [+], 1521337755019hypothetical protein  IglB
7F7308_10041033216..1033845 [+], 630337755020intracellular growth locus subunit C  IglC
8F7308_10051033866..1035062 [+], 1197337755021intracellular growth locus subunit D  IglD
9F7308_10061035074..1035793 [-], 720337755022hypothetical protein  IglJ
10F7308_10071035807..1037000 [-], 1194337755023hypothetical protein  IglI
11F7308_10081037016..1037636 [-], 621337755024hypothetical protein  DotU
12F7308_10091037651..1039078 [-], 1428337755025hypothetical protein  IglH
13F7308_10101039091..1039276 [-], 186337755026hypothetical protein  IglG
14F7308_10111039284..1039397 [+], 114337755027hypothetical protein 
15F7308_10121039612..1041324 [-], 1713337755028DNA polymerase I  IglF
16F7308_10131041330..1041824 [-], 495337755029vgrG protein  VgrG
17F7308_10141041839..1042216 [-], 378337755030hypothetical protein  IglE
18F7308_10151042206..1045478 [-], 3273337755031hypothetical protein  PdpB
19F7308_10161045482..1047944 [-], 2463337755032hypothetical protein  PdpA
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
FTN_1312

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1F7308_10131041330..1041824 [-], 495337755029vgrG protein FTN_1312

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Proteins        Genes
N/A
N/A