I. Summary
SecReT6 ID48 insolico
StrainRhodopirellula baltica SH 1
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1RB96605204810..5205271 [-], 46232476013membrane associated or secreted protein 
2RB9661 (araC)5205359..5206723 [+], 136532476014AraC family transcriptional regulator 
3RB96645206898..5209192 [+], 229532476015inter-alpha-trypsin inhibitor domain-containing protein 
4RB96665209189..5209872 [+], 68432476016hypothetical protein 
5RB96685209887..5210069 [-], 18332476017hypothetical protein 
6RB96695210092..5210265 [-], 17432476018hypothetical protein 
7RB96705210290..5211006 [-], 71732476019hypothetical protein 
8RB96735211126..5211281 [+], 15632476020hypothetical protein 
9RB9674 (pepX)5211283..5213163 [+], 188132476021x-prolyl-dipeptidyl aminopeptidase 
10RB96765213215..5214558 [-], 134432476022signal peptide 
11RB96795214695..5216233 [+], 153932476023hypothetical protein  TssK
12RB96845216230..5216877 [+], 64832476024hypothetical protein  TssL
13RB96855216911..5218644 [+], 173432476025hypothetical protein 
14RB96875218795..5219868 [+], 107432476026hypothetical protein  TssA
15RB96895219934..5220461 [+], 52832476027hypothetical protein  TssB
16RB96905220509..5222011 [+], 150332476028hypothetical protein  TssC
17RB96925222065..5222544 [+], 48032476029hypothetical protein  TssD
18RB96935222556..5223110 [+], 55532476030hypothetical protein  TssE
19RB96965223290..5225191 [+], 190232476031hypothetical protein  TssF
20RB96985225279..5226328 [+], 105032476032hypothetical protein  TssG
21RB96995226252..5228345 [+], 209432476033hypothetical protein  TssI
22RB97005228428..5229342 [+], 91532476034hypothetical protein 
23RB97025229342..5229632 [+], 29132476035hypothetical protein  PAAR
24RB97045229636..5234027 [+], 439232476036hypothetical protein 
25RB97075234044..5234844 [+], 80132476037hypothetical protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
in_silico This literature contains bioinformatics investigation