SecReT6
I. Summary
SecReT6 ID480 insolico
StrainFrancisella sp. TX077308
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_015696
Location1949464..1974019
Comment
FunctionN/A
T6SS TypeType ii (Type FPI)
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentPdpAPdpBIglEVgrGIglFIglGIglHDotUIglI
Number010000110
ComponentIglJPdpCPdpEIglDIglCIglBIglAPdpD
Number00010110
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1F7308_18921945150..1946088 [+], 939337755905hypothetical protein 
2F7308_18931946285..1946542 [+], 258337755906ISSod13, transposase 
3F7308_18941947069..1947848 [-], 780337755907hypothetical protein 
4F7308_18951948099..1948656 [-], 558337755908hypothetical protein 
5F7308_18961948750..1949043 [-], 294337755909hypothetical protein 
6F7308_18971949045..1949464 [-], 420337755910hypothetical protein 
7F7308_18981949464..1952604 [-], 3141337755911hypothetical protein  PdpB
8F7308_18991952737..1954923 [-], 2187337755912hypothetical protein 
9F7308_19001955574..1956818 [-], 1245337755913hypothetical protein 
10F7308_19011956915..1957031 [-], 117337755914hypothetical protein 
11F7308_19021957063..1957599 [-], 537337755915hypothetical protein 
12F7308_19031957750..1957869 [-], 120337755916hypothetical protein 
13F7308_19041958298..1960016 [-], 1719337755917hypothetical protein 
14F7308_19051960102..1961457 [-], 1356337755918hypothetical protein 
15F7308_19061961489..1962025 [-], 537337755919hypothetical protein 
16F7308_19071962522..1962749 [-], 228337755920hypothetical protein 
17F7308_19081962947..1963327 [-], 381337755921hypothetical protein 
18F7308_19091963324..1963908 [-], 585337755922hypothetical protein 
19F7308_19101963920..1965962 [-], 2043337755923hypothetical protein 
20F7308_19111965964..1966581 [-], 618337755924hypothetical protein  DotU
21F7308_19121966591..1968099 [-], 1509337755925hypothetical protein  IglH
22F7308_19131968068..1968916 [-], 849337755926hypothetical protein 
23F7308_19141968935..1970158 [-], 1224337755927hypothetical protein  IglD
24F7308_19151970192..1971247 [-], 1056337755928hypothetical protein 
25F7308_19161971256..1971897 [-], 642337755929hypothetical protein 
26F7308_19171971942..1973465 [-], 1524337755930hypothetical protein  IglB
27F7308_19181973465..1974019 [-], 555337755931hypothetical protein  IglA
28F7308_19191974086..1974214 [+], 129337755932hypothetical protein 
29F7308_19201974274..1974540 [+], 267337755933Thermostable carboxypeptidase 1 
30F7308_19211974547..1975416 [-], 870337755934aspartoacylase 
31F7308_19221975566..1976756 [+], 1191337755935tryptophan synthase subunit beta 
32F7308_19231976759..1977568 [+], 810337755936tryptophan synthase subunit alpha 
33F7308_19241977565..1978281 [-], 717337755937ribosyl nicotinamide transporter, PnuC-like protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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