I. Summary

SecReT6 ID	483
Strain	Escherichia coli O26:H11 str. 11368
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_013361
Location	243837..256893
Comment
Function	N/A
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	0	1	0	0	0	0
Component	TssG	TssJ	TssK	TssM
Number	0	1	0	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	ECO26_0212 (yafS)	238946..239668 [+], 723	260853418	S-adenosyl-L-methionine-dependent methyltransferase
2	ECO26_0213 (rnhA)	239665..240132 [-], 468	260853419	ribonuclease H
3	ECO26_0214 (dnaQ)	240197..240928 [+], 732	260853420	DNA polymerase III subunit epsilon
4	ECO26_0215 (yafT)	241468..242253 [+], 786	260853421	aminopeptidase
5	ECO26_0216 (ykfM)	242390..242869 [-], 480	260853422	hypothetical protein
6	ECO26_0217	242879..243793 [-], 915	260853423	hypothetical protein
7	ECO26_0218	243837..244319 [-], 483	260853424	hypothetical protein	TssD
8	ECO26_0219	244343..245695 [-], 1353	260853425	hypothetical protein	TssA
9	ECO26_0220	245706..249230 [-], 3525	260853426	IcmF	TssM
10	ECO26_0223	250666..251409 [-], 744	260853427	hypothetical protein
11	ECO26_0224	251406..254261 [-], 2856	260853428	ATP-dependent Clp proteinase ATP-binding chain	TssH
12	ECO26_0225	254270..255031 [-], 762	260853429	hypothetical protein	TssL
13	ECO26_0228	256369..256893 [-], 525	260853430	lipoprotein	TssJ
14	ECO26_0230	257682..260303 [+], 2622	260853431	Rhs core protein with extension
15	ECO26_0231	260287..260457 [+], 171	260853432	hypothetical protein
16	ECO26_0232	260505..260768 [+], 264	260853433	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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