 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | EC042_RS01110 (gloB) | 239097..239852 [-], 756 | 446975480 | hydroxyacylglutathione hydrolase | |
2 | EC042_RS01115 | 239886..240608 [+], 723 | 481023496 | class I SAM-dependent methyltransferase | |
3 | EC042_RS01120 (rnhA) | 240605..241072 [-], 468 | 446840627 | ribonuclease HI | |
4 | EC042_RS01125 (dnaQ) | 241137..241868 [+], 732 | 585203913 | DNA polymerase III subunit epsilon | |
5 | EC042_RS01135 | 242404..243189 [+], 786 | 447008904 | hypothetical protein | |
6 | EC042_RS01140 | 243529..244008 [-], 480 | 445935324 | Hcp family type VI secretion system effector | TssD |
7 | EC042_RS01145 | 244026..245384 [-], 1359 | 445995948 | type VI secretion system ImpA family N-terminal domain-containing protein | TssA |
8 | EC042_RS01150 (tssM) | 245395..248832 [-], 3438 | 1511003915 | type VI secretion system membrane subunit TssM | |
9 | EC042_RS01155 (tssA) | 248942..250384 [-], 1443 | 485665474 | type VI secretion system protein TssA | TssA |
10 | EC042_RS01160 (tagO) | 250389..251132 [-], 744 | 446010989 | type VI secretion system-associated protein TagO | |
11 | EC042_RS01165 (tssH) | 251129..253861 [-], 2733 | 446536956 | type VI secretion system ATPase TssH | TssH |
12 | EC042_RS01170 (icmH) | 253871..254644 [-], 774 | 447203013 | type IVB secretion system protein IcmH/DotU | TssL |
13 | EC042_RS01175 (tssK) | 254649..255995 [-], 1347 | 446146658 | type VI secretion system baseplate subunit TssK | TssK |
14 | EC042_RS01180 (tssJ) | 255998..256522 [-], 525 | 446936168 | type VI secretion system lipoprotein TssJ | TssJ |
15 | EC042_RS01185 (tagH) | 256519..257811 [-], 1293 | 446355716 | type VI secretion system-associated FHA domain protein TagH | Fha |
16 | EC042_RS01190 (tssG) | 257816..258865 [-], 1050 | 446819463 | type VI secretion system baseplate subunit TssG | TssG |
17 | EC042_RS01195 (tssF) | 258829..260670 [-], 1842 | 446786139 | type VI secretion system baseplate subunit TssF | TssF |
18 | EC042_RS01200 (tssE) | 260676..261101 [-], 426 | 447112413 | type VI secretion system baseplate subunit TssE | TssE |
19 | EC042_RS01205 (tssC) | 261106..262590 [-], 1485 | 446033725 | type VI secretion system contractile sheath large subunit | TssC |
20 | EC042_RS01210 (tssB) | 262613..263116 [-], 504 | 445963623 | type VI secretion system contractile sheath small subunit | TssB |
21 | EC042_RS01215 | 263819..264337 [+], 519 | 447065707 | Hcp family type VI secretion system effector | TssD |
22 | EC042_RS01225 (tssI) | 264558..266516 [+], 1959 | 485665466 | type VI secretion system tip protein VgrG | TssI |
23 | EC042_RS01230 | 266516..267355 [+], 840 | 446369142 | DUF4123 domain-containing protein | |
24 | EC042_RS01235 | 267377..268948 [+], 1572 | 485665464 | hypothetical protein | |
25 | EC042_RS01240 | 269063..270025 [+], 963 | 446458613 | hypothetical protein | |
26 | EC042_RS01245 | 270338..271261 [+], 924 | pseudogene | ISAs1 family transposase | |
|
Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein