I. Summary
SecReT6 ID49 insolico
StrainChromobacterium violaceum ATCC 12472
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1CV_39534273307..4274488 [-], 118234499408hypothetical protein 
2CV_3954 (idsA)4274545..4275561 [-], 101734499409bifunctional short chain isoprenyl diphosphate 
3CV_39554275660..4276589 [-], 93034499410hypothetical protein 
4CV_39564276591..4277475 [-], 88534499411hypothetical protein 
5CV_3957 (araL)4277480..4278247 [-], 76834499412L-arabinose operon protein AraL 
6CV_3958 (ispA)4278258..4279397 [-], 114034499413octaprenyl-diphosphate synthase 
7CV_39594279442..4281430 [-], 198934499414asparagine synthetase B 
8CV_39604281435..4282250 [-], 81634499415glutamate 5-kinase 
9CV_39614282261..4282986 [-], 72634499416hypothetical protein 
10CV_39624283454..4283612 [+], 15934499417hypothetical protein 
11CV_39634283686..4284771 [-], 108634499418hypothetical protein  TssA
12CV_39644285738..4286475 [-], 73834499419hypothetical protein 
13CV_39654286490..4289117 [-], 262834499420ClpA/B-type chaperone  TssH
14CV_39664289166..4289894 [-], 72934499421hypothetical protein 
15CV_39674289891..4290934 [-], 104434499422hypothetical protein  TssG
16CV_39684290915..4291214 [-], 30034499423hypothetical protein 
17CV_39694291222..4293081 [-], 186034499424hypothetical protein  TssF
18CV_39704293147..4293836 [-], 69034499425hypothetical protein 
19CV_39714293888..4295963 [-], 207634499426hypothetical protein 
20CV_39724295951..4296499 [-], 54934499427hypothetical protein 
21CV_39734296545..4297087 [-], 54334499428hypothetical protein 
22CV_39744297084..4297857 [-], 77434499429hypothetical protein 
23CV_39754297872..4300490 [-], 261934499430Vgr-like protein  TssI
24CV_39764300599..4301036 [-], 43834499431hypothetical protein  TagL
25CV_39774301111..4301608 [-], 49834499432hypothetical protein  TssD
26CV_39784301678..4303156 [-], 147934499433hypothetical protein  TssC
27CV_39794303153..4303659 [-], 50734499434hypothetical protein  TssB
28CV_39804304734..4308516 [-], 378334499435hypothetical protein  TssM
29CV_39814308545..4309402 [-], 85834499436hypothetical protein 
30CV_39824309554..4310102 [+], 54934499437hypothetical protein  TssJ
31CV_39834310149..4311495 [+], 134734499438hypothetical protein  TssK
32CV_39844311503..4312204 [+], 70234499439hypothetical protein  TssL
33CV_39854312201..4312680 [+], 48034499440hypothetical protein  TssE
34CV_39864312701..4315319 [+], 261934499441Vgr-like protein  TssI
35CV_39874315330..4316205 [+], 87634499442hypothetical protein 
36CV_39884316209..4316565 [+], 35734499443hypothetical protein 
37CV_39894316633..4317145 [+], 51334499444hypothetical protein 
38CV_39904317223..4318794 [+], 157234499445hypothetical protein 
39CV_39914318820..4320046 [+], 122734499446hypothetical protein 
40CV_3992 (cyoE)4320113..4321021 [-], 90934499447protoheme IX farnesyltransferase 
41CV_3993 (cyoD)4321033..4321353 [-], 32134499448cytochrome o ubiquinol oxidase subunit IV 
42CV_3994 (cyoC)4321353..4321964 [-], 61234499449cytochrome o ubiquinol oxidase subunit III 
43CV_3995 (cyoB)4321980..4324022 [-], 204334499450cytochrome o ubiquinol oxidase subunit I 
44CV_3996 (cyoA)4324029..4324970 [-], 94234499451cytochrome o ubiquinol oxidase subunit II 
45CV_39974325481..4325681 [-], 20134499452hypothetical protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
in_silico This literature contains bioinformatics investigation