I. Summary
SecReT6 ID490 insolico
StrainEscherichia coli SE15
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1ECSF_26012831967..2833172 [+], 1206387830654hypothetical protein 
2ECSF_26022833172..2833615 [+], 444387830655hypothetical protein 
3ECSF_26032833666..2834472 [-], 807387830656hypothetical protein 
4ECSF_26042834549..2835646 [-], 1098387830657lytic murein transglycosylase A 
5ECSF_26052836787..2837287 [+], 501387830658hypothetical protein  TssB
6ECSF_26062837346..2838884 [+], 1539387830659hypothetical protein  TssC
7ECSF_26072838902..2840239 [+], 1338387830660hypothetical protein  TssK
8ECSF_26082840236..2840901 [+], 666387830661hypothetical protein  TssL
9ECSF_26092840914..2842566 [+], 1653387830662hypothetical protein  TagL
10ECSF_26102842624..2843115 [+], 492387830663hypothetical protein  TssD
11ECSF_26112843306..2845942 [+], 2637387830664Clp ATPase  TssH
12ECSF_26122845942..2848461 [+], 2520387830665hypothetical protein  TssI
13ECSF_26132848448..2849086 [+], 639387830666hypothetical protein 
14ECSF_26142849088..2849639 [+], 552387830667hypothetical protein 
15ECSF_26152849717..2850181 [+], 465387830668hypothetical protein 
16ECSF_26162850239..2850988 [-], 750387830669transposase 
17ECSF_26172851000..2852541 [-], 1542387830670transposase 
18ECSF_26182852741..2853517 [+], 777387830671hypothetical protein 
19ECSF_26192853517..2856906 [+], 3390387830672hypothetical protein  TssM
20ECSF_26202856899..2858509 [+], 1611387830673hypothetical protein  TssA
21ECSF_26212858509..2859933 [+], 1425387830674hypothetical protein  PAAR
22ECSF_26222860908..2862668 [+], 1761387830675hypothetical protein  TssF
23ECSF_26232862632..2863711 [+], 1080387830676hypothetical protein  TssG
24ECSF_26242863692..2864228 [+], 537387830677hypothetical protein  TssJ
25ECSF_26252864232..2864660 [+], 429387830678hypothetical protein  TssE
26ECSF_26262864660..2866036 [+], 1377387830679hypothetical protein  TssA
27ECSF_26272866336..2867292 [-], 957387830680putative phosphoglycerate dehydrogenase 
28ECSF_26282867355..2867951 [-], 597387830681hypothetical protein 
29ECSF_26292867954..2869129 [-], 1176387830682beta-cystathionase 
30ECSF_26302869129..2870709 [-], 1581387830683PTS system maltose/glucose-specific IIABC components 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1ECSF_26102842624..2843115 [+], 492387830663hypothetical protein EC042_4529

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Proteins        Genes