I. Summary

SecReT6 ID	492
Strain	Burkholderia sp. CCGE1002
Replicon	chromosome II [Browse all T6SS(s) in this replicon]
Accession	NC_014118
Location	1167901..1195060
Comment
Function	N/A
T6SS Type	Type i; subtype i2
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

13

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	BC1002_4270	1163285..1164040 [-], 756	295699877	hypothetical protein
2	BC1002_4271	1164243..1165016 [-], 774	295699878	short-chain dehydrogenase/reductase SDR
3	BC1002_4273	1166191..1166433 [-], 243	295699879	hypothetical protein
4	BC1002_4274	1166479..1166610 [+], 132	295699880	hypothetical protein
5	BC1002_4276	1167294..1167887 [+], 594	295699881	ParB-like nuclease
6	BC1002_4277	1167901..1168422 [-], 522	295699882	type VI secretion lipoprotein	TssJ
7	BC1002_4278	1168449..1169585 [-], 1137	295699883	type VI secretion protein	TssG
8	BC1002_4279	1169582..1171396 [-], 1815	295699884	type VI secretion protein	TssF
9	BC1002_4280	1171411..1172997 [-], 1587	295699885	type VI secretion-associated protein	TssA
10	BC1002_4281	1172998..1176582 [-], 3585	295699886	ImcF domain-containing protein	TssM
11	BC1002_4282	1176579..1177913 [-], 1335	295699887	hypothetical protein
12	BC1002_4285	1179632..1182163 [-], 2532	295699888	chitinase-like protein
13	BC1002_4286	1182172..1184508 [-], 2337	295699889	Rhs element Vgr protein	TssI
14	BC1002_4287	1184595..1186166 [-], 1572	295699890	type VI secretion protein EvpB	TssC
15	BC1002_4288	1186241..1186753 [-], 513	295699891	type VI secretion protein	TssB
16	BC1002_4289	1187362..1188714 [+], 1353	295699892	type VI secretion protein	TssK
17	BC1002_4290	1188714..1189445 [+], 732	295699893	DotU family type IV / VI secretion system protein	TssL
18	BC1002_4291	1189513..1189746 [-], 234	295699894	hypothetical protein
19	BC1002_4292	1189956..1191188 [+], 1233	295699895	OmpA/MotB domain-containing protein	TagL
20	BC1002_4293	1191291..1191776 [+], 486	295699896	type VI secretion system effector	TssD
21	BC1002_4294	1191903..1194620 [+], 2718	295699897	type VI secretion ATPase, ClpV1 family	TssH
22	BC1002_4295	1194635..1195060 [+], 426	295699898	type VI secretion system lysozyme-like protein	TssE
23	BC1002_4296	1195403..1195729 [-], 327	295699899	hypothetical protein
24	BC1002_4297	1196394..1197686 [+], 1293	295699900	sodium/hydrogen exchanger
25	BC1002_4298	1198102..1198380 [+], 279	295699901	hypothetical protein
26	BC1002_4299	1198400..1199191 [+], 792	295699902	phosphate ABC transporter substrate-binding protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

EC042_4529

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	BC1002_4293	1191291..1191776 [+], 486	295699896	type VI secretion system effector	EC042_4529

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Proteins        Genes

N/A

N/A