I. Summary

SecReT6 ID	493
Strain	Burkholderia sp. CCGE1002
Replicon	chromosome II [Browse all T6SS(s) in this replicon]
Accession	NC_014118
Location	2453895..2478444
Comment
Function	N/A
T6SS Type	Type i; subtype i4a
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	0	1	1

12

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	BC1002_5441	2450472..2450621 [+], 150	295700987	hypothetical protein
2	BC1002_5442	2450713..2451405 [-], 693	295700988	hypothetical protein
3	BC1002_5443	2451737..2452141 [-], 405	295700989	hypothetical protein
4	BC1002_5444	2453895..2454431 [+], 537	295700990	type VI secretion protein	TssB
5	BC1002_5445	2454514..2456022 [+], 1509	295700991	type VI secretion protein EvpB	TssC
6	BC1002_5446	2456089..2456580 [+], 492	295700992	hypothetical protein	TssD
7	BC1002_5447	2456648..2457085 [+], 438	295700993	type VI secretion system lysozyme-like protein	TssE
8	BC1002_5448	2457105..2458862 [+], 1758	295700994	type VI secretion protein	TssF
9	BC1002_5449	2458817..2459911 [+], 1095	295700995	type VI secretion protein	TssG
10	BC1002_5450	2459923..2462655 [+], 2733	295700996	type VI secretion ATPase, ClpV1 family	TssH
11	BC1002_5451	2462660..2464582 [+], 1923	295700997	ImpA family type VI secretion-associated protein	TssI
12	BC1002_5452	2464591..2465322 [+], 732	295700998	hypothetical protein
13	BC1002_5453	2465325..2465711 [+], 387	295700999	hypothetical protein
14	BC1002_5454	2465725..2465967 [+], 243	295701000	hypothetical protein
15	BC1002_5455	2465981..2466967 [+], 987	295701001	family 3 extracellular solute-binding protein
16	BC1002_5456	2467005..2468279 [+], 1275	295701002	sodium:dicarboxylate symporter
17	BC1002_5457	2468289..2468990 [+], 702	295701003	aspartate racemase
18	BC1002_5458	2468987..2470411 [+], 1425	295701004	sodium:dicarboxylate symporter
19	BC1002_5459	2470408..2470908 [+], 501	295701005	hypothetical protein
20	BC1002_5460	2470905..2472239 [+], 1335	295701006	type VI secretion protein	TssK
21	BC1002_5461	2472292..2473044 [+], 753	295701007	type IV / VI secretion system, DotU	TssL
22	BC1002_5462	2473112..2477305 [+], 4194	295701008	IcmF-like protein	TssM
23	BC1002_5463	2477302..2478444 [+], 1143	295701009	type VI secretion-associated protein, ImpA family	TssA
24	BC1002_5464	2478511..2479407 [+], 897	295701010	hypothetical protein
25	BC1002_5465	2479574..2480539 [+], 966	295701011	CMP/dCMP deaminase zinc-binding protein
26	BC1002_5466	2480939..2481541 [-], 603	295701012	phosphoesterase PA-phosphatase-like protein
27	BC1002_5467	2481886..2482236 [+], 351	295701013	hypothetical protein
28	BC1002_5468	2482236..2482808 [+], 573	295701014	methyltransferase type 12

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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