SecReT6
I. Summary
SecReT6 ID495 insolico
StrainBurkholderia sp. CCGE1003
Repliconchromosome I [Browse all T6SS(s) in this replicon]
AccessionNC_014539
Location570222..582974
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111011100
ComponentTssGTssJTssKTssM
Number0110
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BC1003_0509566962..568626 [+], 1665307728579class I/II aminotransferase 
2BC1003_0510568805..570028 [+], 1224307728580class V aminotransferase 
3BC1003_0511570222..573008 [-], 2787307728581type VI secretion ATPase, ClpV1 family  TssH
4BC1003_0512573308..573793 [-], 486307728582type VI secretion system effector  TssD
5BC1003_0513573807..575669 [-], 1863307728583OmpA/MotB domain-containing protein  TagL
6BC1003_0514575669..576340 [-], 672307728584DotU family type IV / VI secretion system protein  TssL
7BC1003_0515576337..577683 [-], 1347307728585type VI secretion protein  TssK
8BC1003_0516577814..579367 [-], 1554307728586type VI secretion protein EvpB  TssC
9BC1003_0517579394..579903 [-], 510307728587type VI secretion protein  TssB
10BC1003_0518580158..580508 [+], 351307728588hypothetical protein 
11BC1003_0519580612..582213 [+], 1602307728589type VI secretion-associated protein  TssA
12BC1003_0520582363..582974 [+], 612307728590type VI secretion lipoprotein  TssJ
13BC1003_0521583043..584254 [-], 1212307728591major facilitator superfamily protein 
14BC1003_0522584650..586203 [+], 1554307728592xanthine dehydrogenase small subunit 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1BC1003_0512573308..573793 [-], 486307728582type VI secretion system effector EC042_4529

Download FASTA format files
Proteins        Genes
N/A
N/A