I. Summary
SecReT6 ID499 insolico
StrainBurkholderia sp. CCGE1003
Repliconchromosome II [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BC1003_57272512809..2513441 [+], 633307727718hypothetical protein 
2BC1003_57282513515..2513784 [+], 270307727719hypothetical protein 
3BC1003_57292513921..2514856 [+], 936307727720ornithine cyclodeaminase/mu-crystallin 
4BC1003_57302515244..2516725 [+], 1482307727721glucose-6-phosphate 1-dehydrogenase 
5BC1003_57312516822..2517601 [-], 780307727722type IV / VI secretion system protein, DotU family  TssL
6BC1003_57322517598..2518995 [-], 1398307727723type VI secretion protein, VC_A0114 family  TssK
7BC1003_57332519053..2519757 [-], 705307727724type VI secretion lipoprotein, VC_A0113 family  TssJ
8BC1003_57342520052..2520741 [+], 690307727725tetratricopeptide repeat-containing protein 
9BC1003_57352520778..2521326 [+], 549307727726type VI secretion protein, VC_A0107 family  TssB
10BC1003_57362521341..2522831 [+], 1491307727727type VI secretion protein, EvpB/VC_A0108 family  TssC
11BC1003_57372522905..2523408 [+], 504307727728type VI secretion system effector, Hcp1 family  TssD
12BC1003_57382523497..2523976 [+], 480307727729type VI secretion system lysozyme-related protein  TssE
13BC1003_57392524086..2525924 [+], 1839307727730type VI secretion protein, VC_A0110 family  TssF
14BC1003_57402525888..2526982 [+], 1095307727731type VI secretion protein, VC_A0111 family  TssG
15BC1003_57412527016..2529691 [+], 2676307727732type VI secretion ATPase, ClpV1 family  TssH
16BC1003_57422529727..2530845 [+], 1119307727733type VI secretion-associated protein, ImpA family  TssA
17BC1003_57432530987..2531952 [-], 966307727734OmpA/MotB domain-containing protein  TagL
18BC1003_57442531957..2532949 [-], 993307727735type VI secretion-associated protein, BMA_A0400 family 
19BC1003_57452532946..2536860 [-], 3915307727736type VI secretion protein IcmF  TssM
20BC1003_57462537133..2538092 [-], 960307727737peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin 
21BC1003_57472538104..2539126 [+], 1023307727738hypothetical protein 
22BC1003_57482539284..2540420 [+], 1137307727739Inosine/uridine-preferring nucleoside hydrolase 
23BC1003_57492540458..2541414 [-], 957307727740LysR family transcriptional regulator 
24BC1003_57502542129..2543181 [-], 1053307727741alcohol dehydrogenase zinc-binding domain-containing protein 
25BC1003_57512543536..2544525 [+], 990307727742AraC family transcriptional regulator 
26BC1003_57522544573..2546054 [-], 1482307727743diguanylate cyclase 
27BC1003_57532546205..2548784 [-], 2580307727744ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent 
28BC1003_57542549060..2549350 [-], 291307727745hypothetical protein 
29BC1003_57552549697..2550806 [+], 1110307727746hypothetical protein 
30BC1003_57562550840..2551712 [-], 873307727747esterase 
31BC1003_57572551824..2552933 [-], 1110307727748hypothetical protein 
32BC1003_57582553411..2554583 [+], 1173307727749porin Gram-negative type 
33BC1003_57592554612..2554941 [-], 330307727750hypothetical protein 
34BC1003_57602555684..2556658 [+], 975307727751Peptidase M23 
35BC1003_57612556688..2557506 [-], 819307727752alpha/beta hydrolase fold protein 
36BC1003_57622557562..2557960 [-], 399307727753hypothetical protein 
37BC1003_57632558371..2561553 [+], 3183307727754type VI secretion system Vgr family protein  TssI
38BC1003_57642561554..2562348 [+], 795307727755putative ankyrin-repeat exported protein 
39BC1003_57652562516..2563358 [+], 843307727756hypothetical protein 
40BC1003_57662563358..2564614 [+], 1257307727757PAAR repeat-containing protein  PAAR
41BC1003_57672564611..2565045 [+], 435307727758hypothetical protein 
42BC1003_57682565509..2565964 [+], 456307727759(2Fe-2S)-binding domain-containing protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1BC1003_57372522905..2523408 [+], 504307727728type VI secretion system effector, Hcp1 family BCAL0343

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Proteins        Genes