I. Summary

SecReT6 ID	50
Strain	Photorhabdus luminescens subsp. laumondii TTO1
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_005126
Location	372357..415137
Comment
Function	N/A
T6SS Type	Type i; subtype i1
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

13

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	plu0346	368554..369261 [-], 708	37524359	hypothetical protein
2	plu0347	369568..369795 [-], 228	37524360	hypothetical protein
3	plu0348	370266..370646 [-], 381	37524361	hypothetical protein
4	plu0349	370668..370817 [-], 150	37524362	hypothetical protein
5	plu0350	370937..371134 [+], 198	37524363	hypothetical protein
6	plu0351	371238..371789 [-], 552	37524364	hypothetical protein
7	plu0352	372357..372677 [-], 321	37524365	hypothetical protein
8	plu0353	372677..377092 [-], 4416	37524366	hypothetical protein	PAAR
9	plu0354	377114..377533 [-], 420	37524367	hypothetical protein
10	plu0355	377581..379476 [-], 1896	37524368	hypothetical protein	TssI
11	plu0357 (ISPlu9J)	380265..381647 [+], 1383	37524369	IS4 family transposase
12	plu0359 (pmt1)	382431..385976 [-], 3546	37524370	hypothetical protein	TssM
13	plu0360	385973..387406 [-], 1434	37524371	hypothetical protein	TssA
14	plu0361	387412..388059 [-], 648	37524372	hypothetical protein
15	plu0362	388056..388856 [-], 801	37524373	hypothetical protein
16	plu0363	388853..391498 [-], 2646	37524374	hypothetical protein	TssH
17	plu0364	391509..392279 [-], 771	37524375	hypothetical protein	TssL
18	plu0365	392279..393631 [-], 1353	37524376	hypothetical protein	TssK
19	plu0366	393634..394200 [-], 567	37524377	hypothetical protein	TssJ
20	plu0367	394200..395486 [-], 1287	37524378	hypothetical protein	Fha
21	plu0368	395492..396472 [-], 981	37524379	hypothetical protein	TssG
22	plu0369	396508..398355 [-], 1848	37524380	hypothetical protein	TssF
23	plu0370	398357..398797 [-], 441	37524381	hypothetical protein	TssE
24	plu0371	398804..400282 [-], 1479	37524382	hypothetical protein	TssC
25	plu0372	400306..400803 [-], 498	37524383	hypothetical protein	TssB
26	plu0373	401704..402222 [+], 519	37524384	hypothetical protein	TssD
27	plu0374	402861..403703 [+], 843	37524385	hypothetical protein
28	plu0375 (gor)	403799..405169 [+], 1371	37524386	glutathione reductase
29	plu0376	405435..406523 [+], 1089	37524387	hypothetical protein
30	plu0377	406520..408172 [+], 1653	37524388	hypothetical protein
31	plu0378 (mobB)	408253..408771 [-], 519	37524389	molybdopterin-guanine dinucleotide biosynthesis protein B
32	plu0379 (mobA)	408768..409367 [-], 600	37524390	molybdopterin-guanine dinucleotide biosynthesis protein MobA
33	plu0380	409576..410568 [+], 993	37524391	serine/threonine protein kinase
34	plu0381 (dsbA)	410589..411212 [+], 624	37524392	periplasmic protein disulfide isomerase I
35	plu0382	411368..412444 [-], 1077	37524393	hypothetical protein
36	plu0383	412510..415137 [-], 2628	37524394	hypothetical protein
37	plu0384	415165..415404 [-], 240	37524395	hypothetical protein
38	plu0385 (ISPlu10K)	415530..416543 [+], 1014	37524396	IS630 family transposase
39	plu0386 (polA)	417018..419807 [+], 2790	37524397	DNA polymerase I

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

ECA2866

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	plu0373	401704..402222 [+], 519	37524384	hypothetical protein	ECA2866

Download FASTA format files

Proteins        Genes

N/A

(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603]

This literature contains bioinformatics investigation