I. Summary

SecReT6 ID	500
Strain	Stigmatella aurantiaca DW4/3-1
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_014623
Location	2237225..2255762
Comment
Function	N/A
T6SS Type	Type i; subtype i1
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	0	0	1	0	0	1	2	1	1
Component	TssG	TssJ	TssK	TssM
Number	0	0	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	STAUR_1801	2233115..2234794 [+], 1680	310819074	AMP-dependent synthetase and ligase domain-containing protein
2	STAUR_1802	2234835..2235221 [+], 387	310819075	hypothetical protein
3	STAUR_1803	2235214..2236224 [+], 1011	310819076	hypothetical protein
4	STAUR_1804	2236229..2237107 [+], 879	310819077	hypothetical protein
5	STAUR_1805	2237225..2237845 [+], 621	310819078	intracellular growth locus subunit a	TssB
6	STAUR_1806	2237887..2239380 [+], 1494	310819079	hypothetical protein	TssC
7	STAUR_1807	2239429..2240004 [+], 576	310819080	hypothetical protein
8	STAUR_1808	2240030..2241283 [+], 1254	310819081	hypothetical protein	TssK
9	STAUR_1809	2241287..2241679 [+], 393	310819082	gpw/gp25 family protein	TssE
10	STAUR_1810	2241679..2243328 [+], 1650	310819083	hypothetical protein
11	STAUR_1811	2243371..2243973 [+], 603	310819084	hypothetical protein
12	STAUR_1812 (impG)	2243980..2245629 [+], 1650	310819085	hypothetical protein	TssF
13	STAUR_1813	2245626..2246264 [+], 639	310819086	hypothetical protein	TssL
14	STAUR_1814	2246261..2246572 [+], 312	310819087	hypothetical protein
15	STAUR_1815	2246576..2250430 [+], 3855	310819088	hypothetical protein	TssM
16	STAUR_1816	2250439..2250909 [+], 471	310819089	hypothetical protein
17	STAUR_1817	2250927..2252300 [-], 1374	310819090	hypothetical protein
18	STAUR_1818	2252329..2254251 [-], 1923	310819091	hypothetical protein
19	STAUR_1819	2254311..2255762 [-], 1452	310819092	hypothetical protein	TssC
20	STAUR_1820	2255788..2255916 [-], 129	310819093	hypothetical protein
21	STAUR_1821	2255920..2257236 [+], 1317	310819094	hypothetical protein
22	STAUR_1822	2257298..2257579 [-], 282	310819095	hypothetical protein
23	STAUR_1823	2257768..2258913 [+], 1146	310819096	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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