 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | Pat9b_2499 | 2722690..2727213 [-], 4524 | 317048708 | YD repeat-containing protein | PAAR |
2 | Pat9b_2500 | 2727216..2727629 [-], 414 | 317048709 | hypothetical protein | |
3 | Pat9b_2501 | 2727626..2729548 [-], 1923 | 317048710 | ImpA family type VI secretion-associated protein | TssI |
4 | Pat9b_2502 | 2729569..2731011 [-], 1443 | 317048711 | serine/threonine protein kinase | |
5 | Pat9b_2503 | 2731041..2733647 [-], 2607 | 317048712 | type VI secretion ATPase, ClpV1 family | TssH |
6 | Pat9b_2504 | 2733701..2734750 [-], 1050 | 317048713 | type VI secretion protein | TssG |
7 | Pat9b_2505 | 2734747..2736621 [-], 1875 | 317048714 | type VI secretion protein | TssF |
8 | Pat9b_2506 | 2736624..2737184 [-], 561 | 317048715 | type VI secretion system lysozyme-like protein | TssE |
9 | Pat9b_2507 | 2737174..2738001 [-], 828 | 317048716 | virulence protein SciE type | TagJ |
10 | Pat9b_2508 | 2738018..2738977 [-], 960 | 317048717 | hypothetical protein | |
11 | Pat9b_2509 | 2738988..2739779 [-], 792 | 317048718 | protein serine/threonine phosphatase | |
12 | Pat9b_2510 | 2739776..2741581 [-], 1806 | 317048719 | FHA domain-containing protein | Fha |
13 | Pat9b_2511 | 2741661..2741774 [+], 114 | 317048720 | hypothetical protein | |
14 | Pat9b_2512 | 2742184..2742579 [-], 396 | 317048721 | hypothetical protein | |
15 | Pat9b_2513 | 2742635..2743189 [-], 555 | 317048722 | hypothetical protein | |
16 | Pat9b_2514 | 2743248..2743661 [-], 414 | 317048723 | hypothetical protein | |
17 | Pat9b_2515 | 2743658..2744650 [-], 993 | 317048724 | hypothetical protein | |
18 | Pat9b_2516 | 2744761..2745243 [-], 483 | 317048725 | type VI secretion system effector | TssD |
19 | Pat9b_2517 | 2745462..2746958 [-], 1497 | 317048726 | type VI secretion protein | TssC |
20 | Pat9b_2518 | 2746958..2747488 [-], 531 | 317048727 | type VI secretion protein | TssB |
21 | Pat9b_2519 | 2747561..2748571 [-], 1011 | 317048728 | type VI secretion-associated protein | TssA |
22 | Pat9b_2520 | 2748584..2749297 [-], 714 | 317048729 | type VI secretion-associated protein | |
23 | Pat9b_2521 | 2749312..2752938 [-], 3627 | 317048730 | type VI secretion protein IcmF | TssM |
24 | Pat9b_2522 | 2752942..2754180 [-], 1239 | 317048731 | DotU family type IV/VI secretion system protein | TssL |
25 | Pat9b_2523 | 2754200..2755540 [-], 1341 | 317048732 | type VI secretion protein | TssK |
26 | Pat9b_2524 | 2755550..2756041 [-], 492 | 317048733 | type VI secretion lipoprotein | TssJ |
27 | Pat9b_2525 | 2756068..2756643 [-], 576 | 317048734 | hypothetical protein | |
28 | Pat9b_2526 | 2757602..2758258 [-], 657 | 317048735 | binding-protein-dependent transporter inner membrane component | |
29 | Pat9b_2527 | 2758239..2759339 [-], 1101 | 317048736 | ABC transporter-like protein | |
30 | Pat9b_2528 | 2759533..2760171 [+], 639 | 317048737 | TetR family transcriptional regulator | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein