I. Summary

SecReT6 ID	504
Strain	Terriglobus saanensis SP1PR4
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_014963
Location	1280310..1301694
Comment
Function	N/A
T6SS Type	Type i; subtype i4b
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	0	2	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	AciPR4_1074	1275725..1278181 [+], 2457	320106309	serine/threonine protein kinase
2	AciPR4_1075	1278178..1279482 [+], 1305	320106310	hypothetical protein
3	AciPR4_1076	1279479..1280273 [+], 795	320106311	protein serine/threonine phosphatase
4	AciPR4_1077	1280310..1283738 [-], 3429	320106312	ImcF domain-containing protein	TssM
5	AciPR4_1078	1283739..1284455 [-], 717	320106313	DotU family type IV/VI secretion system protein	TssL
6	AciPR4_1079	1284452..1285807 [-], 1356	320106314	type VI secretion protein	TssK
7	AciPR4_1080	1286057..1287235 [+], 1179	320106315	hypothetical protein
8	AciPR4_1081	1287260..1288630 [-], 1371	320106316	type VI secretion protein	TssK
9	AciPR4_1082	1288908..1289423 [+], 516	320106317	type VI secretion protein	TssB
10	AciPR4_1083	1289424..1290923 [+], 1500	320106318	EvpB tamily type VI secretion protein	TssC
11	AciPR4_1084	1290972..1291463 [+], 492	320106319	hypothetical protein	TssD
12	AciPR4_1085	1291679..1293571 [+], 1893	320106320	type VI secretion-associated protein, ImpA family	TssA
13	AciPR4_1086	1293546..1294025 [+], 480	320106321	type VI secretion system lysozyme-like protein	TssE
14	AciPR4_1087	1294028..1295869 [+], 1842	320106322	type VI secretion protein	TssF
15	AciPR4_1088	1295833..1296894 [+], 1062	320106323	type VI secretion protein	TssG
16	AciPR4_1089	1296913..1299576 [+], 2664	320106324	type VI secretion ATPase, ClpV1 family	TssH
17	AciPR4_1090	1299628..1301694 [+], 2067	320106325	ImpA family type VI secretion-associated protein	TssI
18	AciPR4_1091	1302023..1303084 [-], 1062	320106326	NAD-dependent epimerase/dehydratase
19	AciPR4_1092	1303135..1303434 [-], 300	320106327	regulatory protein ArsR

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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