I. Summary

SecReT6 ID	505
Strain	Geobacter sp. M18
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_014973
Location	3587914..3603063
Comment
Function	N/A
T6SS Type	Type i; subtype i4a
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	0	1	1	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	GM18_3021	3585077..3585523 [-], 447	322420517	hypothetical protein
2	GM18_3022	3585777..3586433 [-], 657	322420518	phosphoesterase PA-phosphatase-like protein
3	GM18_3023	3586522..3586812 [-], 291	322420519	hypothetical protein
4	GM18_3024	3586858..3587604 [-], 747	322420520	hypothetical protein
5	GM18_3025	3587914..3589803 [-], 1890	322420521	ImpA family type VI secretion-associated protein	TssI
6	GM18_3026	3589813..3590841 [-], 1029	322420522	type VI secretion protein	TssG
7	GM18_3027	3590838..3592634 [-], 1797	322420523	type VI secretion protein	TssF
8	GM18_3028	3592639..3593109 [-], 471	322420524	type VI secretion system lysozyme-like protein	TssE
9	GM18_3029	3593125..3593622 [-], 498	322420525	type VI secretion system effector	TssD
10	GM18_3030	3593658..3595142 [-], 1485	322420526	EvpB family type VI secretion protein	TssC
11	GM18_3031	3595157..3595678 [-], 522	322420527	type VI secretion protein	TssB
12	GM18_3032	3595702..3597033 [-], 1332	322420528	type VI secretion-associated protein, ImpA family	TssA
13	GM18_3033	3597030..3600479 [-], 3450	322420529	hypothetical protein	TssM
14	GM18_3034	3600495..3601160 [-], 666	322420530	DotU family type IV / VI secretion system protein	TssL
15	GM18_3035	3601163..3602560 [-], 1398	322420531	type VI secretion protein	TssK
16	GM18_3036	3602560..3603063 [-], 504	322420532	type VI secretion lipoprotein	TssJ
17	GM18_3037	3603265..3603441 [+], 177	322420533	twin-arginine translocation protein, TatA/E family subunit
18	GM18_3038	3603505..3604008 [+], 504	322420534	molybdopterin-guanine dinucleotide biosynthesis protein B
19	GM18_3039	3604188..3604466 [-], 279	322420535	hypothetical protein
20	GM18_3040	3604756..3605409 [+], 654	322420536	hypothetical protein
21	GM18_3041	3605544..3605816 [-], 273	322420537	hypothetical protein
22	GM18_3042	3606098..3606727 [+], 630	322420538	hypothetical protein
23	GM18_3043	3606769..3607203 [+], 435	322420539	thioesterase superfamily protein
24	GM18_3044	3607200..3607409 [+], 210	322420540	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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