I. Summary

SecReT6 ID	506
Strain	Granulicella tundricola MP5ACTX9
Replicon	plasmid pACIX901 [Browse all T6SS(s) in this replicon]
Accession	NC_015057
Location	8653..34129
Comment
Function	N/A
T6SS Type	Type i; subtype i4b
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	0	2	1

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III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	AciX9_3995	8084..8623 [-], 540	322432860	hypothetical protein
2	AciX9_3996	8653..10689 [-], 2037	322432861	ImpA family type VI secretion-associated protein	TssI
3	AciX9_3997	10797..13457 [-], 2661	322432862	type VI secretion ATPase, ClpV1 family	TssH
4	AciX9_3998	13497..14549 [-], 1053	322432863	type VI secretion protein	TssG
5	AciX9_3999	14513..16360 [-], 1848	322432864	type VI secretion protein	TssF
6	AciX9_4000	16364..16825 [-], 462	322432865	type VI secretion system lysozyme-like protein	TssE
7	AciX9_4001	16855..18714 [-], 1860	322432866	type VI secretion-associated protein, ImpA family	TssA
8	AciX9_4002	18701..19432 [-], 732	322432867	virulence protein SciE type	TagJ
9	AciX9_4003	19440..19916 [-], 477	322432868	hypothetical protein	TssD
10	AciX9_4004	19998..21491 [-], 1494	322432869	type VI secretion protein EvpB	TssC
11	AciX9_4005	21484..22005 [-], 522	322432870	type VI secretion protein	TssB
12	AciX9_4006	22432..23787 [+], 1356	322432871	type VI secretion protein	TssK
13	AciX9_4007	23891..25909 [+], 2019	322432872	amidohydrolase
14	AciX9_4008	25967..28417 [-], 2451	322432873	hypothetical protein
15	AciX9_4009	28657..30015 [+], 1359	322432874	type VI secretion protein	TssK
16	AciX9_4010	30012..30746 [+], 735	322432875	DotU family type IV/VI secretion system protein	TssL
17	AciX9_4011	30743..34129 [+], 3387	322432876	ImcF domain-containing protein	TssM
18	AciX9_4012	34208..34984 [+], 777	322432877	protein serine/threonine phosphatase
19	AciX9_4013	35290..36555 [+], 1266	322432878	peptidase M24
20	AciX9_4014	36653..37351 [+], 699	322432879	GntR family transcriptional regulator

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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