I. Summary

SecReT6 ID	507
Strain	Burkholderia sp. CCGE1001
Replicon	chromosome I [Browse all T6SS(s) in this replicon]
Accession	NC_015136
Location	191742..211407
Comment
Function	N/A
T6SS Type	Type i; subtype i3
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	0	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

12

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	BC1001_0168	186891..187949 [-], 1059	323524540	biotin synthase
2	BC1001_0169	187985..188722 [-], 738	323524541	dethiobiotin synthase
3	BC1001_0170	188719..189903 [-], 1185	323524542	8-amino-7-oxononanoate synthase
4	BC1001_0171	189903..191258 [-], 1356	323524543	adenosylmethionine-8-amino-7-oxononanoate aminotransferase
5	BC1001_0172	191742..192833 [-], 1092	323524544	ImpA domain-containing protein	TssA
6	BC1001_0173	192830..193921 [-], 1092	323524545	type VI secretion protein	TssG
7	BC1001_0174	193921..195810 [-], 1890	323524546	type VI secretion protein	TssF
8	BC1001_0175	195839..196411 [-], 573	323524547	type VI secretion system lysozyme-like protein	TssE
9	BC1001_0176	196398..197279 [-], 882	323524548	virulence protein SciE type	TagJ
10	BC1001_0177	197276..197977 [-], 702	323524549	hypothetical protein
11	BC1001_0178	198420..201167 [+], 2748	323524550	type VI secretion ATPase, ClpV1 family	TssH
12	BC1001_0179	201229..201768 [+], 540	323524551	type VI secretion protein	TssB
13	BC1001_0180	201809..203302 [+], 1494	323524552	EvpB type VI secretion protein	TssC
14	BC1001_0181	203400..203885 [+], 486	323524553	type VI secretion system effector, Hcp1 family	TssD
15	BC1001_0182	203985..204488 [+], 504	323524554	type VI secretion lipoprotein	TssJ
16	BC1001_0183	204510..205856 [+], 1347	323524555	type VI secretion protein	TssK
17	BC1001_0184	205938..207266 [+], 1329	323524556	type IV / VI secretion system protein, DotU family	TssL
18	BC1001_0185	207295..211407 [+], 4113	323524557	type VI secretion protein IcmF	TssM
19	BC1001_0186	211503..212081 [-], 579	323524558	hypothetical protein
20	BC1001_0187	212192..213499 [-], 1308	323524559	hypothetical protein
21	BC1001_0188	214290..214739 [-], 450	323524560	hypothetical protein
22	BC1001_0189	214771..215901 [-], 1131	323524561	acyl-CoA dehydrogenase domain-containing protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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