I. Summary

SecReT6 ID	508
Strain	Burkholderia sp. CCGE1001
Replicon	chromosome II [Browse all T6SS(s) in this replicon]
Accession	NC_015137
Location	2285703..2305641
Comment
Function	N/A
T6SS Type	Type i; subtype i4b
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	0	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	BC1001_5629	2281728..2282360 [+], 633	323529911	hypothetical protein
2	BC1001_5630	2282526..2282789 [+], 264	323529912	hypothetical protein
3	BC1001_5631	2282909..2283841 [+], 933	323529913	ornithine cyclodeaminase/mu-crystallin
4	BC1001_5632	2284133..2285614 [+], 1482	323529914	glucose-6-phosphate 1-dehydrogenase
5	BC1001_5633	2285703..2286482 [-], 780	323529915	type IV / VI secretion system protein, DotU family	TssL
6	BC1001_5634	2286479..2287825 [-], 1347	323529916	type VI secretion protein	TssK
7	BC1001_5635	2287934..2288560 [-], 627	323529917	type VI secretion lipoprotein	TssJ
8	BC1001_5636	2288944..2289630 [+], 687	323529918	tetratricopeptide repeat-containing protein
9	BC1001_5637	2289666..2290193 [+], 528	323529919	type VI secretion protein	TssB
10	BC1001_5638	2290208..2291698 [+], 1491	323529920	EvpB type VI secretion protein	TssC
11	BC1001_5639	2291772..2292275 [+], 504	323529921	type VI secretion system effector, Hcp1 family	TssD
12	BC1001_5640	2292359..2292838 [+], 480	323529922	type VI secretion system lysozyme-like protein	TssE
13	BC1001_5641	2292949..2294787 [+], 1839	323529923	type VI secretion protein	TssF
14	BC1001_5642	2294751..2295845 [+], 1095	323529924	type VI secretion protein	TssG
15	BC1001_5643	2295879..2298554 [+], 2676	323529925	type VI secretion ATPase, ClpV1 family	TssH
16	BC1001_5644	2298590..2299708 [+], 1119	323529926	type VI secretion-associated protein, ImpA family	TssA
17	BC1001_5645	2299807..2300772 [-], 966	323529927	OmpA/MotB domain-containing protein	TagL
18	BC1001_5646	2300777..2301769 [-], 993	323529928	type VI secretion-associated protein
19	BC1001_5647	2301766..2305641 [-], 3876	323529929	type VI secretion protein IcmF	TssM
20	BC1001_5648	2305915..2306760 [-], 846	323529930	peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin
21	BC1001_5649	2306886..2307863 [+], 978	323529931	hypothetical protein
22	BC1001_5650	2308017..2309153 [+], 1137	323529932	Inosine/uridine-preferring nucleoside hydrolase
23	BC1001_5651	2309191..2310147 [-], 957	323529933	LysR family transcriptional regulator

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

BCAL0343

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	BC1001_5639	2291772..2292275 [+], 504	323529921	type VI secretion system effector, Hcp1 family	BCAL0343

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Proteins        Genes

N/A

N/A