I. Summary

SecReT6 ID	509
Strain	Acidovorax avenae subsp. avenae ATCC 19860
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_015138
Location	1673795..1698996
Comment
Function	N/A
T6SS Type	Type i; subtype i3
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	0	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	Acav_1501	1670486..1671712 [-], 1227	326316318	RND family efflux transporter MFP subunit
2	Acav_1502	1671875..1672765 [+], 891	326316319	squalene synthase HpnC
3	Acav_1503	1672809..1673465 [-], 657	326316320	hypothetical protein
4	Acav_1504	1673795..1674277 [-], 483	326316321	hypothetical protein	TssD
5	Acav_1505	1674854..1676827 [+], 1974	326316322	serine/threonine protein kinase
6	Acav_1506	1676933..1677439 [+], 507	326316323	hypothetical protein
7	Acav_1507	1677461..1679818 [+], 2358	326316324	FHA domain-containing protein	Fha
8	Acav_1508	1679815..1680603 [+], 789	326316325	protein serine/threonine phosphatase
9	Acav_1509	1680647..1681228 [+], 582	326316326	type VI secretion lipoprotein	TssJ
10	Acav_1510	1681276..1682610 [+], 1335	326316327	type VI secretion protein	TssK
11	Acav_1511	1682625..1683977 [+], 1353	326316328	DotU family type IV / VI secretion system protein	TssL
12	Acav_1512	1683981..1687613 [+], 3633	326316329	type VI secretion protein IcmF	TssM
13	Acav_1513	1687613..1688308 [+], 696	326316330	type VI secretion system-associated protein
14	Acav_1514	1688354..1689403 [+], 1050	326316331	type VI secretion-associated protein, ImpA family	TssA
15	Acav_1515	1689564..1690112 [+], 549	326316332	type VI secretion protein	TssB
16	Acav_1516	1690126..1691625 [+], 1500	326316333	type VI secretion protein EvpB	TssC
17	Acav_1517	1691750..1692538 [+], 789	326316334	virulence protein SciE type	TagJ
18	Acav_1518	1692555..1693076 [+], 522	326316335	type VI secretion system lysozyme-like protein	TssE
19	Acav_1519	1693150..1695024 [+], 1875	326316336	type VI secretion protein	TssF
20	Acav_1520	1695021..1696187 [+], 1167	326316337	type VI secretion protein	TssG
21	Acav_1521	1696258..1698996 [+], 2739	326316338	type VI secretion ATPase, ClpV1 family	TssH
22	Acav_1523	1700138..1700641 [+], 504	326316339	hypothetical protein
23	Acav_1524	1700652..1702904 [-], 2253	326316340	xanthine dehydrogenase
24	Acav_1525	1702910..1703860 [-], 951	326316341	xanthine dehydrogenase

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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