SecReT6
I. Summary
SecReT6 ID51 insolico
StrainPhotorhabdus luminescens subsp. laumondii TTO1
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_005126
Location2679150..2707812
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
13
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1plu22762674801..2675373 [+], 57337526189hypothetical protein 
2plu22772675668..2676039 [+], 37237526190hypothetical protein 
3plu2278 (ccdA)2676127..2676366 [+], 24037526191CcdA protein 
4plu2279 (ccdB)2676368..2676673 [+], 30637526192cytotoxic protein CcdB 
5plu22802676944..2677198 [-], 25537526193hypothetical protein 
6plu22812677254..2677712 [-], 45937526194hypothetical protein 
7plu2282 (ISPlu1C)2677694..2678662 [-], 96937526195IS30 family transposase 
8plu22832678805..2679005 [-], 20137526196hypothetical protein 
9plu2284 (bvgS)2679150..2682761 [-], 361237526197virulence sensor protein BvgS precursor 
10plu2285 (bvgR)2682765..2683391 [-], 62737526198two-component response regulator BvgR protein 
11plu22862683422..2684681 [-], 126037526199hypothetical protein 
12plu22872684731..2687313 [-], 258337526200hypothetical protein  TssH
13plu22882687306..2690815 [-], 351037526201hypothetical protein  TssM
14plu22892690831..2691451 [-], 62137526202hypothetical protein  TssL
15plu22902691451..2692848 [-], 139837526203hypothetical protein  TssK
16plu22912692852..2693529 [-], 67837526204hypothetical protein  TssJ
17plu22922693522..2694625 [-], 110437526205hypothetical protein  TssA
18plu22932694639..2694941 [-], 30337526206hypothetical protein  PAAR
19plu22942694938..2695534 [-], 59737526207hypothetical protein 
20plu22952695569..2697575 [-], 200737526208hypothetical protein  TssI
21plu22962697600..2698610 [-], 101137526209hypothetical protein  TssG
22plu22972698601..2700412 [-], 181237526210hypothetical protein  TssF
23plu22982700417..2700860 [-], 44437526211hypothetical protein  TssE
24plu22992700912..2701406 [-], 49537526212hypothetical protein  TssD
25plu23002701463..2702944 [-], 148237526213hypothetical protein  TssC
26plu23012702952..2703503 [-], 55237526214hypothetical protein  TssB
27plu23022704228..2704482 [+], 25537526215hypothetical protein 
28plu23032704727..2705602 [-], 87637526216hypothetical protein 
29plu23052706247..2706519 [+], 27337526217hypothetical protein 
30plu23062706507..2706797 [+], 29137526218hypothetical protein 
31plu23082707235..2707513 [-], 27937526219hypothetical protein 
32plu23092707510..2707812 [-], 30337526220hypothetical protein 
33plu23132709005..2710858 [+], 185437526221hypothetical protein 
34plu2314 (ISPlu3T)2710876..2711901 [-], 102637526222IS630 family transposase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






N/A
N/A
(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
 
in_silico This literature contains bioinformatics investigation

Genomics & Bioinformatics Group in MML, SJTU