SecReT6

T6SS
Effector
Immunity
Reference

I. Summary

SecReT6 ID	510
Strain	Planctomyces brasiliensis DSM 5305
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_015174
Location	2053609..2081120
Comment
Function	N/A
T6SS Type	Type i; subtype i5
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	3	1	1	1	1	2	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	0	1	1


III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	Plabr_1730	2048609..2049991 [+], 1383	325108295	hypothetical protein
2	Plabr_1731	2050279..2051060 [-], 782	325108296	transposase
3	Plabr_1732	2051649..2052491 [-], 843	325108297	lipase
4	Plabr_1733	2052604..2053482 [-], 879	325108298	forkhead-associated protein	Fha
5	Plabr_1734	2053609..2054814 [+], 1206	325108299	type VI secretion-associated protein, ImpA family	TssA
6	Plabr_1735	2055032..2055550 [+], 519	325108300	type VI secretion protein	TssB
7	Plabr_1736	2055552..2057051 [+], 1500	325108301	type VI secretion protein EvpB	TssC
8	Plabr_1737	2057243..2058856 [+], 1614	325108302	type VI secretion protein EvpB	TssC
9	Plabr_1738	2058888..2059688 [+], 801	325108303	virulence protein SciE type	TagJ
10	Plabr_1739	2059764..2060237 [+], 474	325108304	type VI secretion system lysozyme-like protein	TssE
11	Plabr_1740	2060242..2062083 [+], 1842	325108305	type VI secretion protein	TssF
12	Plabr_1741	2062080..2063180 [+], 1101	325108306	type VI secretion protein	TssG
13	Plabr_1742	2063220..2065874 [+], 2655	325108307	type VI secretion ATPase, ClpV1 family	TssH
14	Plabr_1743	2065931..2066428 [+], 498	325108308	type VI secretion system effector	TssD
15	Plabr_1745	2067042..2067707 [-], 666	325108309	hypothetical protein
16	Plabr_1746	2067772..2068371 [-], 600	325108310	hypothetical protein
17	Plabr_1747	2068444..2069490 [-], 1047	325108311	hypothetical protein
18	Plabr_1748	2069562..2070137 [-], 576	325108312	hypothetical protein	TssD
19	Plabr_1749	2070229..2070753 [-], 525	325108313	type VI secretion system effector	TssD
20	Plabr_1750	2071041..2073005 [+], 1965	325108314	ImpA family type VI secretion-associated protein	TssI
21	Plabr_1751	2073092..2073382 [+], 291	325108315	hypothetical protein	PAAR
22	Plabr_1752	2073401..2074999 [-], 1599	325108316	methyltransferase regulatory domain-containing protein
23	Plabr_1753	2075202..2076956 [-], 1755	325108317	hypothetical protein
24	Plabr_1754	2077357..2078793 [+], 1437	325108318	type VI secretion protein	TssK
25	Plabr_1755	2078790..2079431 [+], 642	325108319	type IV / VI secretion system, DotU	TssL
26	Plabr_1756	2079489..2081120 [+], 1632	325108320	hypothetical protein	TssM
27	Plabr_1757	2081436..2083616 [-], 2181	325108321	hypothetical protein
28	Plabr_1758	2083845..2084045 [-], 201	325108322	CsbD family protein
29	Plabr_1759	2084486..2085379 [+], 894	325108323	3-oxoacyl-(acyl-carrier-protein) reductase
30	Plabr_1760	2085592..2085777 [+], 186	325108324	pH adaptation potassium efflux system protein B 2; sodium/hydrogen antiporter subunit

Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins Genes

V. Investigation of the genomic context of the T6SS gene cluster.

N/A