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III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | Vch1786_II0899 | 885523..887235 [-], 1713 | 360038109 | ribosomal large subunit pseudouridine synthase A | |
2 | Vch1786_II0900 | 888203..889246 [+], 1044 | 360038110 | hypothetical protein | |
3 | Vch1786_II0901 | 889678..890184 [+], 507 | 360038111 | type VI secretion system protein ImpB | TssB |
4 | Vch1786_II0902 | 890225..891703 [+], 1479 | 360038112 | type VI secretion system protein ImpC | TssC |
5 | Vch1786_II0903 | 891706..892143 [+], 438 | 360038113 | type VI secretion system protein | TssE |
6 | Vch1786_II0904 | 892149..893918 [+], 1770 | 360038114 | type VI secretion system protein ImpG | TssF |
7 | Vch1786_II0905 | 893882..894898 [+], 1017 | 360038115 | type VI secretion system protein ImpH | TssG |
8 | Vch1786_II0906 | 894901..896388 [+], 1488 | 360038116 | type VI secretion system protein ImpI | Fha |
9 | Vch1786_II0907 | 896391..896867 [+], 477 | 360038117 | type VI secretion system protein VasD | TssJ |
10 | Vch1786_II0908 | 896874..898208 [+], 1335 | 360038118 | type VI secretion system protein ImpJ | TssK |
11 | Vch1786_II0909 | 898211..898984 [+], 774 | 360038119 | type VI secretion system protein ImpK | TssL |
12 | Vch1786_II0910 | 899010..901619 [+], 2610 | 360038120 | type VI secretion system protein VasG | TssH |
13 | Vch1786_II0911 | 901622..903214 [+], 1593 | 360038121 | sigma-54 dependent transcriptional regulator | VasH |
14 | Vch1786_II0912 | 903211..903867 [+], 657 | 360038122 | type VI secretion system protein VasI | VCA0118 |
15 | Vch1786_II0913 | 903877..905286 [+], 1410 | 360038123 | type VI secretion system protein VasJ | TssA |
16 | Vch1786_II0914 | 905302..908847 [+], 3546 | 360038124 | type VI secretion system protein ImpL | TssM |
17 | Vch1786_II0915 | 908898..910160 [+], 1263 | 360038125 | type VI secretion system protein VasL | TssA |
18 | Vch1786_II0916 | 910413..913466 [+], 3054 | 360038126 | VgrG protein | TssI |
19 | Vch1786_II0917 | 913463..913831 [+], 369 | 360038127 | hypothetical protein | TsiV3 (i) |
20 | Vch1786_II0919 | 913979..914239 [-], 261 | 360038129 | hypothetical protein | |
21 | Vch1786_II0918 | 914214..914423 [+], 210 | 360038128 | hypothetical protein | |
22 | Vch1786_II0920 (rbsD) | 914523..914942 [+], 420 | 360038130 | D-ribose pyranase | |
23 | Vch1786_II0921 (rbsA) | 914969..916471 [+], 1503 | 360038131 | D-ribose transporter ATP binding protein | |
24 | Vch1786_II0922 (rbsC) | 916486..917469 [+], 984 | 360038132 | ribose ABC transporter permease protein | |
25 | Vch1786_II0923 (rbsB) | 917530..918408 [+], 879 | 360038133 | D-ribose transporter subunit RbsB | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein