I. Summary

SecReT6 ID	517
Strain	Burkholderia sp. YI23
Replicon	chromosome III [Browse all T6SS(s) in this replicon]
Accession	NC_016590
Location	413695..432901
Comment
Function	N/A
T6SS Type	Type i; subtype i3
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	0	1	1

12

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	BYI23_C003550	409192..410451 [+], 1260	377807747	amidase
2	BYI23_C003560 (mlrC)	410448..411929 [+], 1482	377807748	microcystin LR degradation protein MlrC-like protein
3	BYI23_C003570	412001..413023 [+], 1023	377807749	hypothetical protein
4	BYI23_C003580	413108..413611 [+], 504	377807750	hypothetical protein
5	BYI23_C003590 (impA)	413695..414717 [+], 1023	377807751	protein ImpA	TssA
6	BYI23_C003600	414755..415279 [+], 525	377807752	type VI secretion protein	TssB
7	BYI23_C003610 (evpB)	415290..416807 [+], 1518	377807753	type VI secretion protein, EvpB	TssC
8	BYI23_C003620	416858..417349 [+], 492	377807754	hypothetical protein	TssD
9	BYI23_C003630	417357..417866 [+], 510	377807755	type VI secretion system lysozyme like protein	TssE
10	BYI23_C003640	417863..419725 [+], 1863	377807756	type VI secretion protein	TssF
11	BYI23_C003650	419710..420726 [+], 1017	377807757	type VI secretion protein	TssG
12	BYI23_C003660	420731..423340 [+], 2610	377807758	chaperone	TssH
13	BYI23_C003670	423327..425300 [+], 1974	377807759	ImpA family type VI secretion-associated protein	TssI
14	BYI23_C003680	425310..426689 [+], 1380	377807760	regulatory protein	Fha
15	BYI23_C003690	426698..428032 [+], 1335	377807761	type VI secretion protein	TssK
16	BYI23_C003700 (dotU)	428061..429395 [+], 1335	377807762	DotU family type IV/VI secretion system protein	TssL
17	BYI23_C003710	429392..432901 [+], 3510	377807763	hypothetical protein	TssM
18	BYI23_C003720	432898..433425 [+], 528	377807764	hypothetical protein	TagF
19	BYI23_C003730	433428..434777 [-], 1350	377807765	serine/threonine protein kinase
20	BYI23_C003740	434781..435674 [-], 894	377807766	sensor protein
21	BYI23_C003750	435704..436540 [-], 837	377807767	hypothetical protein
22	BYI23_C003760	436632..437573 [-], 942	377807768	putative transmembrane anti-sigma factor

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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