SecReT6
I. Summary
SecReT6 ID518 insolico
StrainBurkholderia sp. YI23
Repliconchromosome III [Browse all T6SS(s) in this replicon]
AccessionNC_016590
Location1197184..1210387
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111101110
ComponentTssGTssJTssKTssM
Number0010
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BYI23_C0101901192499..1193329 [-], 831377808411phospholipase D/Transphosphatidylase 
2BYI23_C0102001193848..1195068 [-], 1221377808412Sel1 domain-containing protein repeat-containing protein 
3BYI23_C0102101195146..1197191 [-], 2046377808413phospholipase D/Transphosphatidylase 
4BYI23_C0102201197184..1199844 [-], 2661377808414hypothetical protein  TssI
5BYI23_C010230 (evpB)1200236..1201789 [-], 1554377808415type VI secretion protein, EvpB  TssC
6BYI23_C0102401201833..1202345 [-], 513377808416hypothetical protein  TssB
7BYI23_C0102501202827..1204179 [+], 1353377808417hypothetical protein  TssK
8BYI23_C0102601204176..1204904 [+], 729377808418hypothetical protein  TssL
9BYI23_C010270 (ompA/motB)1204844..1206592 [+], 1749377808419OmpA/MotB family outer membrane protein  TagL
10BYI23_C0102801206688..1207173 [+], 486377808420hypothetical protein  TssD
11BYI23_C0102901207288..1209954 [+], 2667377808421ATPase with chaperone activity ATP-binding subunit  TssH
12BYI23_C0103001209929..1210387 [+], 459377808422hypothetical protein  TssE
13BYI23_C0103101210412..1211752 [-], 1341377808423major facilitator superfamily transporter 
14BYI23_C0103201211802..1213400 [-], 1599377808424AMP-dependent synthetase and ligase 
15BYI23_C0103301213397..1214839 [-], 1443377808425succinate-semialdehyde dehydrogenase (NAD(P)+) 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1BYI23_C0102801206688..1207173 [+], 486377808420hypothetical protein EC042_4529

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Proteins        Genes
N/A
N/A