I. Summary

SecReT6 ID	518
Strain	Burkholderia sp. YI23
Replicon	chromosome III [Browse all T6SS(s) in this replicon]
Accession	NC_016590
Location	1197184..1210387
Comment
Function	N/A
T6SS Type	Type i; subtype i2
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	0	1	1	1	0
Component	TssG	TssJ	TssK	TssM
Number	0	0	1	0

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	BYI23_C010190	1192499..1193329 [-], 831	377808411	phospholipase D/Transphosphatidylase
2	BYI23_C010200	1193848..1195068 [-], 1221	377808412	Sel1 domain-containing protein repeat-containing protein
3	BYI23_C010210	1195146..1197191 [-], 2046	377808413	phospholipase D/Transphosphatidylase
4	BYI23_C010220	1197184..1199844 [-], 2661	377808414	hypothetical protein	TssI
5	BYI23_C010230 (evpB)	1200236..1201789 [-], 1554	377808415	type VI secretion protein, EvpB	TssC
6	BYI23_C010240	1201833..1202345 [-], 513	377808416	hypothetical protein	TssB
7	BYI23_C010250	1202827..1204179 [+], 1353	377808417	hypothetical protein	TssK
8	BYI23_C010260	1204176..1204904 [+], 729	377808418	hypothetical protein	TssL
9	BYI23_C010270 (ompA/motB)	1204844..1206592 [+], 1749	377808419	OmpA/MotB family outer membrane protein	TagL
10	BYI23_C010280	1206688..1207173 [+], 486	377808420	hypothetical protein	TssD
11	BYI23_C010290	1207288..1209954 [+], 2667	377808421	ATPase with chaperone activity ATP-binding subunit	TssH
12	BYI23_C010300	1209929..1210387 [+], 459	377808422	hypothetical protein	TssE
13	BYI23_C010310	1210412..1211752 [-], 1341	377808423	major facilitator superfamily transporter
14	BYI23_C010320	1211802..1213400 [-], 1599	377808424	AMP-dependent synthetase and ligase
15	BYI23_C010330	1213397..1214839 [-], 1443	377808425	succinate-semialdehyde dehydrogenase (NAD(P)+)

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

EC042_4529

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	BYI23_C010280	1206688..1207173 [+], 486	377808420	hypothetical protein	EC042_4529

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Proteins        Genes

N/A

N/A