SecReT6

T6SS
Effector
Immunity
Reference

I. Summary

SecReT6 ID	519
Strain	Azospirillum brasilense Sp245
Replicon	plasmid AZOBR_p1 [Browse all T6SS(s) in this replicon]
Accession	NC_016594
Location	1541932..1570041
Comment
Function	N/A
T6SS Type	Type i; subtype i4a
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	2	1	1	0	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	0	1	1


III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	AZOBR_p1140121	1538110..1538685 [+], 576	392378675	RNA polymerase ECF sigma factor (sigma70)
2	AZOBR_p1140122	1538682..1539335 [+], 654	392378676	putative transcriptional activator
3	AZOBR_p1140123 (dinB)	1539404..1540603 [+], 1200	392378677	DNA polymerase IV, devoid of proofreading,damage-inducible protein P
4	AZOBR_p1140124	1540698..1541090 [+], 393	392378678	conserved exported protein of unknown function
5	AZOBR_p1140125	1541250..1541930 [-], 681	392378679	hypothetical protein
6	AZOBR_p1140126	1541932..1544007 [-], 2076	392378680	hypothetical protein	TssI
7	AZOBR_p1140127 (clpV)	1544024..1546639 [-], 2616	392378681	protein clpV1	TssH
8	AZOBR_p1140128	1546636..1547739 [-], 1104	392378682	hypothetical protein	TssG
9	AZOBR_p1140129	1547703..1549499 [-], 1797	392378683	hypothetical protein	TssF
10	AZOBR_p1140130	1549514..1549987 [-], 474	392378684	hypothetical protein	TssE
11	AZOBR_p1140131	1550152..1550619 [-], 468	392378685	hypothetical protein	TssD
12	AZOBR_p1140132	1550706..1552175 [-], 1470	392378686	hypothetical protein	TssC
13	AZOBR_p1140133	1552225..1552761 [-], 537	392378687	hypothetical protein	TssB
14	AZOBR_p1140134	1552930..1553520 [-], 591	392378688	hypothetical protein
15	AZOBR_p1140135	1553490..1553657 [-], 168	392378689	hypothetical protein
16	AZOBR_p1140136	1553694..1554008 [-], 315	392378690	hypothetical protein
17	AZOBR_p1140137	1554112..1556765 [+], 2654	392378691	conserved membrane protein of unknown function
18	AZOBR_p1150001	1556904..1557203 [+], 300	392378692	membrane protein of unknown function
19	AZOBR_p1150002	1557200..1558558 [+], 1359	392378693	exported protein of unknown function
20	AZOBR_p1150003	1558417..1559226 [+], 810	392378694	serine phosphatase (fragment)
21	AZOBR_p1150004	1559223..1559987 [+], 765	392378695	hypothetical protein
22	AZOBR_p1150005	1559998..1560513 [+], 516	392378696	conserved exported protein of unknown function	SPOR
23	AZOBR_p1150006	1560730..1561494 [+], 765	392378697	conserved exported protein of unknown function	SPOR
24	AZOBR_p1150007	1561500..1561949 [+], 450	392378698	conserved exported protein of unknown function
25	AZOBR_p1150008	1561977..1563320 [+], 1344	392378699	hypothetical protein	TssK
26	AZOBR_p1150009	1563329..1564213 [+], 885	392378700	hypothetical protein	TssL
27	AZOBR_p1150010	1564229..1564687 [+], 459	392378701	hypothetical protein
28	AZOBR_p1150011	1564684..1569480 [+], 4797	392378702	hypothetical protein	TssM
29	AZOBR_p1150012	1569484..1570041 [+], 558	392378703	hypothetical protein	TssD
30	AZOBR_p1150013	1570038..1570625 [+], 588	392378704	hypothetical protein
31	AZOBR_p1150014	1570652..1571605 [+], 954	392378705	membrane protein of unknown function
32	AZOBR_p1150015	1571688..1572419 [+], 732	392378706	putative Periplasmic protein
33	AZOBR_p1150016 (mopA)	1572837..1573628 [+], 792	392378707	molybdenum-pterin-binding protein mopA
34	AZOBR_p1150017 (modA)	1573653..1574399 [+], 747	392378708	molybdenum ABC transporter (substrate-binding protein)

Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins Genes

V. Investigation of the genomic context of the T6SS gene cluster.

N/A