SecReT6
I. Summary
SecReT6 ID520 insolico
StrainAcinetobacter calcoaceticus PHEA-2
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_016603
Location653847..692119
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111211111
ComponentTssGTssJTssKTssM
Number1013
15
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BDGL_000620650283..651305 [+], 1023375134238ABC nitrate/sulfonate/bicarbonate family transporter, periplasmic ligand binding protein 
2BDGL_000621651357..652238 [-], 882375134239ABC transporter 
3BDGL_000622 (ssuC)652238..652495 [-], 258375134240ABC nitrate/sulfonate/bicarbonate family transporter, inner membrane subunit 
4BDGL_000623652473..653144 [-], 672375134241ABC nitrate/sulfonate/bicarbonate family transporter, inner membrane subunit 
5BDGL_000624653303..653701 [-], 399375134242hypothetical protein 
6BDGL_000625653847..656966 [+], 3120375134243hypothetical protein  TssI
7BDGL_000626656963..658396 [+], 1434375134244hypothetical protein 
8BDGL_000627658399..659478 [+], 1080375134245hypothetical protein 
9BDGL_000628659643..661337 [+], 1695375134246hypothetical protein 
10BDGL_000629661354..661884 [+], 531375134247hypothetical protein 
11BDGL_000630661973..662326 [+], 354375134248hypothetical protein 
12BDGL_000631662289..662471 [+], 183375134249hypothetical protein 
13BDGL_000632662712..665282 [+], 2571375134250hypothetical protein  TssI
14BDGL_000633665284..666204 [+], 921375134251hypothetical protein 
15BDGL_000634666197..668938 [+], 2742375134252hypothetical protein 
16BDGL_000635668949..669683 [+], 735375134253hypothetical protein 
17BDGL_000636669735..670511 [+], 777375134254hypothetical protein 
18BDGL_000637670528..671433 [+], 906375134255hypothetical protein 
19BDGL_000638672126..672815 [+], 690375134256hypothetical protein 
20BDGL_000639672832..673335 [+], 504375134257hypothetical protein  TssB
21BDGL_000640673328..674809 [+], 1482375134258hypothetical protein  TssC
22BDGL_000641674859..675362 [+], 504375134259hypothetical protein  TssD
23BDGL_000642675441..675917 [+], 477375134260hypothetical protein  TssE
24BDGL_000643675932..677743 [+], 1812375134261hypothetical protein  TssF
25BDGL_000644677707..678705 [+], 999375134262hypothetical protein  TssG
26BDGL_000645678702..680111 [+], 1410375134263hypothetical protein 
27BDGL_000646680214..680534 [+], 321375134264hypothetical protein  TssM
28BDGL_000647680503..683370 [+], 2868375134265hypothetical protein  TssM
29BDGL_000648683357..683920 [+], 564375134266hypothetical protein  TssM
30BDGL_000649683958..684917 [+], 960375134267hypothetical protein 
31BDGL_000650 (motB)684920..685687 [+], 768375134268OmpA/MotB domain-containing protein  TagL
32BDGL_000651685715..685837 [-], 123375134269hypothetical protein 
33BDGL_000652 (clpV1)686116..688797 [+], 2682375134270ClpA/B type protease  TssH
34BDGL_000653688820..689914 [+], 1095375134271hypothetical protein  TssA
35BDGL_000654689931..691295 [+], 1365375134272hypothetical protein  TssK
36BDGL_000655691313..692119 [+], 807375134273aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B  TssL
37BDGL_000656692132..692752 [+], 621375134274hypothetical protein 
38BDGL_000657692796..693713 [+], 918375134275hypothetical protein 
39BDGL_000658693710..694396 [-], 687375134276hypothetical protein 
40BDGL_000659694711..695358 [+], 648375134277ankyrin 
41BDGL_000660 (guaD)695375..695812 [+], 438375134278guanine deaminase (Guanase) 
42BDGL_000661 (cynX)695857..697038 [+], 1182375134279MFS transporter; MFS transporter cyanate permease family 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
A1S_1296

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1BDGL_000641674859..675362 [+], 504375134259hypothetical protein A1S_1296

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Proteins        Genes
N/A
N/A

Genomics & Bioinformatics Group in MML, SJTU