I. Summary
SecReT6 ID522 insolico
StrainKlebsiella oxytoca KCTC 1686
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1KOX_187454051818..4052537 [+], 720375260540aspartate racemase 
2KOX_187504052566..4053573 [+], 1008375260541hypothetical protein 
3KOX_187554053570..4054340 [+], 771375260542hypothetical protein 
4KOX_187604054340..4055116 [+], 777375260543hypothetical protein 
5KOX_187654055395..4055958 [-], 564375260544Pfpi family intracellular protease 
6KOX_187704056025..4056180 [+], 156375260545NmrA family protein 
7KOX_187754056792..4057283 [+], 492375260546type VI secretion system protein ImpB  TssB
8KOX_187804057324..4058859 [+], 1536375260547type VI secretion protein EvpB  TssC
9KOX_187854058873..4060216 [+], 1344375260548hypothetical protein  TssK
10KOX_187904060213..4060878 [+], 666375260549hypothetical protein  TssL
11KOX_187954060875..4062563 [+], 1689375260550OmpA/MotB domain-containing protein  TagL
12KOX_188004062708..4063199 [+], 492375260551type VI secretion system effector  TssD
13KOX_188054063446..4066088 [+], 2643375260552type VI secretion ATPase, ClpV1 family protein  TssH
14KOX_188104066085..4068580 [+], 2496375260553hypothetical protein  TssI
15KOX_188154068855..4068980 [-], 126375260554hypothetical protein 
16KOX_188204069661..4069798 [-], 138375260555hypothetical protein 
17KOX_188254069840..4070055 [-], 216375260556hypothetical protein 
18KOX_188304070197..4070793 [+], 597375260557hypothetical protein 
19KOX_188354070795..4071055 [+], 261375260558hypothetical protein  PAAR
20KOX_188404071880..4072488 [+], 609375260559hypothetical protein 
21KOX_188454072495..4073940 [+], 1446375260560hypothetical protein  TssM
22KOX_188504073972..4075870 [+], 1899375260561type VI secretion system protein ImpL  TssM
23KOX_188554076096..4077856 [+], 1761375260562type VI secretion protein  TssF
24KOX_188604077820..4078905 [+], 1086375260563hypothetical protein  TssG
25KOX_188654078925..4079422 [+], 498375260564type VI secretion system protein VasD  TssJ
26KOX_188704079424..4079879 [+], 456375260565type VI secretion system protein  TssE
27KOX_188754079903..4081237 [+], 1335375260566type VI secretion system protein VasL  TssA
28KOX_188804081400..4083079 [-], 1680375260567beta-xylosidase 
29KOX_188854083134..4084588 [-], 1455375260568sugar (glycoside-Pentoside-Hexuronide) transporter 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1KOX_188004062708..4063199 [+], 492375260551type VI secretion system effector EC042_4529

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Proteins        Genes