SecReT6

T6SS
Effector
Immunity
Reference

I. Summary

SecReT6 ID	523
Strain	Klebsiella oxytoca KCTC 1686
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_016612
Location	4819335..4852335
Comment
Function	N/A
T6SS Type	Type i; subtype i2
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	0	2	1	1	0	1	1	0	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1


III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	KOX_22380	4814841..4815911 [-], 1071	375261265	ABC transporter
2	KOX_22385	4815904..4817673 [-], 1770	375261266	putative ABC transport system inner membrane permease
3	KOX_22390	4817745..4818833 [-], 1089	375261267	extracellular solute-binding protein
4	KOX_22395	4819038..4819184 [-], 147	375261268	hypothetical protein
5	KOX_22400	4819335..4819805 [-], 471	375261269	type VI secretion system protein VasD	TssJ
6	KOX_22405	4819858..4820943 [-], 1086	375261270	type VI secretion system protein ImpH	TssG
7	KOX_22410	4820907..4822661 [-], 1755	375261271	type VI secretion protein	TssF
8	KOX_22415	4823015..4823242 [-], 228	375261272	hypothetical protein
9	KOX_22420	4823310..4823507 [+], 198	375261273	hypothetical protein
10	KOX_22425	4823529..4826999 [-], 3471	375261274	type VI secretion system protein ImpL	TssM
11	KOX_22430	4826996..4828219 [-], 1224	375261275	hypothetical protein
12	KOX_22435	4828306..4829124 [-], 819	375261276	hypothetical protein
13	KOX_22440	4829158..4829958 [-], 801	375261277	hypothetical protein
14	KOX_22445	4829992..4830792 [-], 801	375261278	hypothetical protein
15	KOX_22450	4830826..4831626 [-], 801	375261279	hypothetical protein
16	KOX_22455	4831660..4832466 [-], 807	375261280	hypothetical protein
17	KOX_22460	4832478..4835615 [-], 3138	375261281	hypothetical protein
18	KOX_22465	4835663..4836370 [-], 708	375261282	hypothetical protein
19	KOX_22470	4836462..4837214 [-], 753	375261283	hypothetical protein
20	KOX_22475	4837319..4838140 [-], 822	375261284	hypothetical protein
21	KOX_22480	4838164..4838904 [-], 741	375261285	hypothetical protein
22	KOX_22485	4839005..4842130 [-], 3126	375261286	hypothetical protein
23	KOX_22490	4842155..4843027 [-], 873	375261287	hypothetical protein
24	KOX_22495	4843027..4845369 [-], 2343	375261288	hypothetical protein	TssI
25	KOX_22500	4845366..4845731 [-], 366	375261289	ClpV
26	KOX_22505	4846018..4846158 [-], 141	375261290	hypothetical protein	TssD
27	KOX_22510	4846160..4846510 [-], 351	375261291	hypothetical protein	TssD
28	KOX_22515	4846515..4848227 [-], 1713	375261292	OmpA/MotB domain-containing protein	TagL
29	KOX_22520	4848224..4848913 [-], 690	375261293	putative OmpA-family membrane protein	TssL
30	KOX_22525	4848910..4850250 [-], 1341	375261294	hypothetical protein	TssK
31	KOX_22530	4850271..4851809 [-], 1539	375261295	type VI secretion protein EvpB	TssC
32	KOX_22535	4851844..4852335 [-], 492	375261296	type VI secretion system protein ImpB	TssB
33	KOX_22540	4853195..4854277 [+], 1083	375261297	putative dehydrogenase
34	KOX_22545	4854514..4856664 [+], 2151	375261298	formate dehydrogenase subunit alpha

Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins Genes

V. Investigation of the genomic context of the T6SS gene cluster.

Homology Effector list

EC042_4529

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	KOX_22510	4846160..4846510 [-], 351	375261291	hypothetical protein	EC042_4529

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Proteins Genes

N/A