I. Summary

SecReT6 ID	525
Strain	Azospirillum lipoferum 4B
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_016622
Location	925575..954369
Comment
Function	N/A
T6SS Type	Type i; subtype i5
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	2	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

14

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	AZOLI_0994	922333..922515 [+], 183	374291533	hypothetical protein
2	AZOLI_0998	923584..925593 [-], 2010	374291534	putative serine/threonine protein kinase; type VI secretion associated protein
3	AZOLI_0999	925575..929216 [-], 3642	374291535	putative Type VI secretion protein IcmF-like	TssM
4	AZOLI_1000	929220..930746 [-], 1527	374291536	hypothetical protein	TssL
5	AZOLI_1001	930743..931426 [-], 684	374291537	hypothetical protein	TssJ
6	AZOLI_1002	931670..932407 [+], 738	374291538	hypothetical protein
7	AZOLI_1003	932430..933971 [-], 1542	374291539	putative methylase
8	AZOLI_1004	934133..935218 [-], 1086	374291540	hypothetical protein	TssG
9	AZOLI_1005	935182..937014 [-], 1833	374291541	hypothetical protein	TssF
10	AZOLI_1006	937007..937483 [-], 477	374291542	hypothetical protein	TssE
11	AZOLI_1007	937662..938459 [-], 798	374291543	putative avirulence protein (ImpE-like) involved in protein secretion	TagJ
12	AZOLI_1008	938510..940060 [-], 1551	374291544	hypothetical protein	TssC
13	AZOLI_1009	940068..941561 [-], 1494	374291545	hypothetical protein	TssC
14	AZOLI_1010	941566..942072 [-], 507	374291546	hypothetical protein	TssB
15	AZOLI_1011	942117..943259 [-], 1143	374291547	hypothetical protein	TssA
16	AZOLI_1012	943618..943836 [+], 219	374291548	hypothetical protein
17	AZOLI_1013	943854..944237 [+], 384	374291549	hypothetical protein	PAAR
18	AZOLI_1014	944242..945309 [+], 1068	374291550	hypothetical protein
19	AZOLI_1015 (clpB3)	945499..948189 [+], 2691	374291551	ATP-dependent chaperone; type VI secretion associated protein	TssH
20	AZOLI_1016	948342..948818 [+], 477	374291552	hypothetical protein	TssD
21	AZOLI_1018	948964..951084 [+], 2121	374291553	hypothetical protein	TssI
22	AZOLI_1019	951131..951718 [+], 588	374291554	hypothetical protein
23	AZOLI_1020	951723..952979 [+], 1257	374291555	putative SMAD/FHA domain; type VI secretion machinery component	Fha
24	AZOLI_1021	953035..954369 [+], 1335	374291556	hypothetical protein	TssK
25	AZOLI_1022	954400..955158 [+], 759	374291557	hypothetical protein
26	AZOLI_1023	955155..957323 [+], 2169	374291558	putative permease of the major facilitator superfamily
27	AZOLI_1024	957320..958402 [+], 1083	374291559	putative ABC transporter; periplasmic component
28	AZOLI_1025	958399..959223 [+], 825	374291560	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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