I. Summary

SecReT6 ID	529
Strain	Vibrio furnissii NCTC 11218
Replicon	chromosome II [Browse all T6SS(s) in this replicon]
Accession	NC_016628
Location	808587..832165
Comment
Function	N/A
T6SS Type	Type i; subtype i5
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	2	0	1	1	1	1	2	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	vfu_B00773	803889..804182 [-], 294	375132899	hypothetical protein
2	vfu_B00774	804418..805266 [+], 849	375132900	pirin family protein
3	vfu_B00775	805426..806112 [-], 687	375132901	two-component response regulator
4	vfu_B00777	806392..807186 [-], 795	375132902	sensor signal transduction histidine kinase
5	vfu_B00778	807188..807793 [-], 606	375132903	sensor signal transduction histidine kinase
6	vfu_B00779	807787..808590 [-], 804	375132904	Cyclic nucleotide-binding:Protein kinase
7	vfu_B00780	808587..811997 [-], 3411	375132905	hypothetical protein	TssM
8	vfu_B00781	812010..813227 [-], 1218	375132906	hypothetical protein	TssL
9	vfu_B00782	813232..814521 [-], 1290	375132907	hypothetical protein	TssK
10	vfu_B00783	814568..815083 [-], 516	375132908	lipoprotein	TssJ
11	vfu_B00784	815080..816069 [-], 990	375132909	hypothetical protein	Fha
12	vfu_B00785	816078..816812 [-], 735	375132910	hypothetical protein
13	vfu_B00786	816809..818377 [-], 1569	375132911	ATP-dependent Clp protease ATP-binding subunit	TssH
14	vfu_B00787	818432..819343 [-], 912	375132912	ATP-dependent Clp protease ATP-binding subunit	TssH
15	vfu_B00788	819393..820418 [-], 1026	375132913	hypothetical protein	TssG
16	vfu_B00789	820409..822184 [-], 1776	375132914	hypothetical protein	TssF
17	vfu_B00790	822177..822599 [-], 423	375132915	GPW / gp25 family	TssE
18	vfu_B00791	822596..824020 [-], 1425	375132916	hypothetical protein	TssC
19	vfu_B00792	824049..825527 [-], 1479	375132917	hypothetical protein	TssC
20	vfu_B00793	825524..826030 [-], 507	375132918	hypothetical protein	TssB
21	vfu_B00794	826054..826578 [-], 525	375132919	hypothetical protein
22	vfu_B00795	826729..828063 [-], 1335	375132920	hypothetical protein	TssA
23	vfu_B00796	828096..829175 [-], 1080	375132921	hypothetical protein
24	vfu_B00797	829228..829518 [-], 291	375132922	PAAR repeat-containing protein	PAAR
25	vfu_B00798	829518..830099 [-], 582	375132923	hypothetical protein
26	vfu_B00799	830102..832165 [-], 2064	375132924	hypothetical protein	TssI
27	vfu_B00800	832205..833212 [-], 1008	375132925	ABC transporter substrate-binding protein
28	vfu_B00801	833209..835320 [-], 2112	375132926	major facilitator superfamily protein
29	vfu_B00802	835317..836123 [-], 807	375132927	hypothetical protein
30	vfu_B00803	836508..836789 [-], 282	375132928	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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