 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | vfu_B01168 | 1228216..1229184 [+], 969 | 375133270 | cation diffusion facilitator family transporter | |
2 | vfu_B01169 | 1229195..1229611 [+], 417 | 375133271 | transcriptional regulator | |
3 | vfu_B01170 | 1229619..1230080 [-], 462 | 375133272 | membrane protein, hypothetical | |
4 | vfu_B01171 | 1230316..1230759 [+], 444 | 375133273 | transcriptional regulator, AsnC family | |
5 | vfu_B01172 | 1231183..1231467 [+], 285 | 375133274 | hypothetical protein | PAAR |
6 | vfu_B01173 | 1231451..1232458 [+], 1008 | 375133275 | hypothetical protein | |
7 | vfu_B01176 | 1232863..1233372 [+], 510 | 375133276 | hypothetical protein | TssB |
8 | vfu_B01177 | 1233419..1234894 [+], 1476 | 375133277 | hypothetical protein | TssC |
9 | vfu_B01178 | 1234897..1235334 [+], 438 | 375133278 | hypothetical protein | TssE |
10 | vfu_B01179 | 1235340..1237109 [+], 1770 | 375133279 | hypothetical protein | TssF |
11 | vfu_B01180 | 1237106..1238089 [+], 984 | 375133280 | hypothetical protein | TssG |
12 | vfu_B01181 | 1238093..1239580 [+], 1488 | 375133281 | hypothetical protein | Fha |
13 | vfu_B01182 | 1239583..1240059 [+], 477 | 375133282 | hypothetical protein | TssJ |
14 | vfu_B01183 | 1240066..1241400 [+], 1335 | 375133283 | hypothetical protein | TssK |
15 | vfu_B01184 | 1241403..1242176 [+], 774 | 375133284 | hypothetical protein | TssL |
16 | vfu_B01185 | 1242203..1244815 [+], 2613 | 375133285 | clpB protein | TssH |
17 | vfu_B01186 | 1244818..1246407 [+], 1590 | 375133286 | sigma-54 dependent transcriptional regulator | VasH |
18 | vfu_B01187 | 1246452..1247063 [+], 612 | 375133287 | hypothetical protein | |
19 | vfu_B01188 | 1247073..1248473 [+], 1401 | 375133288 | hypothetical protein | TssA |
20 | vfu_B01189 | 1248492..1252037 [+], 3546 | 375133289 | IcmF-like protein | TssM |
21 | vfu_B01190 | 1252090..1253367 [+], 1278 | 375133290 | hypothetical protein | TssA |
22 | vfu_B01191 | 1253554..1256775 [+], 3222 | 375133291 | VgrG protein | TssI |
23 | vfu_B01192 | 1257183..1257362 [+], 180 | 375133292 | hypothetical protein | |
24 | vfu_B01193 | 1257464..1257730 [-], 267 | 375133293 | hypothetical protein | |
25 | vfu_B01195 | 1258112..1258555 [+], 444 | 375133294 | ribose ABC transporter protein | |
26 | vfu_B01196 | 1258587..1260092 [+], 1506 | 375133295 | D-ribose transporter ATP-binding protein | |
27 | vfu_B01197 | 1260089..1261072 [+], 984 | 375133296 | ribose ABC transporter permease | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein