SecReT6
I. Summary
SecReT6 ID530 insolico
StrainVibrio furnissii NCTC 11218
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_016628
Location1232863..1256775
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number101121111
ComponentTssGTssJTssKTssM
Number1111
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1vfu_B011681228216..1229184 [+], 969375133270cation diffusion facilitator family transporter 
2vfu_B011691229195..1229611 [+], 417375133271transcriptional regulator 
3vfu_B011701229619..1230080 [-], 462375133272membrane protein, hypothetical 
4vfu_B011711230316..1230759 [+], 444375133273transcriptional regulator, AsnC family 
5vfu_B011721231183..1231467 [+], 285375133274hypothetical protein  PAAR
6vfu_B011731231451..1232458 [+], 1008375133275hypothetical protein 
7vfu_B011761232863..1233372 [+], 510375133276hypothetical protein  TssB
8vfu_B011771233419..1234894 [+], 1476375133277hypothetical protein  TssC
9vfu_B011781234897..1235334 [+], 438375133278hypothetical protein  TssE
10vfu_B011791235340..1237109 [+], 1770375133279hypothetical protein  TssF
11vfu_B011801237106..1238089 [+], 984375133280hypothetical protein  TssG
12vfu_B011811238093..1239580 [+], 1488375133281hypothetical protein  Fha
13vfu_B011821239583..1240059 [+], 477375133282hypothetical protein  TssJ
14vfu_B011831240066..1241400 [+], 1335375133283hypothetical protein  TssK
15vfu_B011841241403..1242176 [+], 774375133284hypothetical protein  TssL
16vfu_B011851242203..1244815 [+], 2613375133285clpB protein  TssH
17vfu_B011861244818..1246407 [+], 1590375133286sigma-54 dependent transcriptional regulator  VasH
18vfu_B011871246452..1247063 [+], 612375133287hypothetical protein 
19vfu_B011881247073..1248473 [+], 1401375133288hypothetical protein  TssA
20vfu_B011891248492..1252037 [+], 3546375133289IcmF-like protein  TssM
21vfu_B011901252090..1253367 [+], 1278375133290hypothetical protein  TssA
22vfu_B011911253554..1256775 [+], 3222375133291VgrG protein  TssI
23vfu_B011921257183..1257362 [+], 180375133292hypothetical protein 
24vfu_B011931257464..1257730 [-], 267375133293hypothetical protein 
25vfu_B011951258112..1258555 [+], 444375133294ribose ABC transporter protein 
26vfu_B011961258587..1260092 [+], 1506375133295D-ribose transporter ATP-binding protein 
27vfu_B011971260089..1261072 [+], 984375133296ribose ABC transporter permease 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
VC1416 , VCA0017, VCA0017, VCA0018

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1vfu_A019572052205..2054271 [-], 2067375131026vgrG protein VC1416
2vfu_A019582054423..2054941 [-], 519375131027hcp protein VCA0017
3vfu_B010101055989..1056507 [+], 519375133122type VI secretion system effector VCA0017
4vfu_B010111056659..1058755 [+], 2097375133123vgrG protein VCA0018

Download FASTA format files
Proteins        Genes
N/A
N/A

Genomics & Bioinformatics Group in MML, SJTU