 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | Desaf_2229 | 2471586..2472191 [+], 606 | 374300576 | hypothetical protein | |
2 | Desaf_2230 | 2472194..2472550 [+], 357 | 374300577 | hypothetical protein | |
3 | Desaf_2231 | 2472664..2473341 [-], 678 | 374300578 | hypothetical protein | |
4 | Desaf_2232 | 2473427..2474269 [+], 843 | 374300579 | hypothetical protein | |
5 | Desaf_2233 | 2474273..2474983 [+], 711 | 374300580 | endonuclease/exonuclease/phosphatase | |
6 | Desaf_2234 | 2475177..2475398 [+], 222 | 374300581 | hypothetical protein | |
7 | Desaf_2235 | 2476499..2477035 [+], 537 | 374300582 | type VI secretion lipoprotein | TssJ |
8 | Desaf_2236 | 2477035..2478423 [+], 1389 | 374300583 | type VI secretion protein | TssK |
9 | Desaf_2237 | 2478427..2479095 [+], 669 | 374300584 | DotU family type IV / VI secretion system protein | TssL |
10 | Desaf_2238 | 2479097..2482579 [+], 3483 | 374300585 | hypothetical protein | TssM |
11 | Desaf_2240 | 2485130..2485612 [+], 483 | 374300586 | type VI secretion protein | TssB |
12 | Desaf_2241 | 2485624..2487111 [+], 1488 | 374300587 | type VI secretion protein EvpB | TssC |
13 | Desaf_2242 | 2487163..2487645 [+], 483 | 374300588 | type VI secretion system effector | TssD |
14 | Desaf_2243 | 2487751..2488167 [+], 417 | 374300589 | type VI secretion system lysozyme-like protein | TssE |
15 | Desaf_2244 | 2488181..2489914 [+], 1734 | 374300590 | type VI secretion protein | TssF |
16 | Desaf_2245 | 2489878..2490945 [+], 1068 | 374300591 | type VI secretion protein | TssG |
17 | Desaf_2246 | 2490942..2493566 [+], 2625 | 374300592 | type VI secretion ATPase, ClpV1 family | TssH |
18 | Desaf_2247 | 2493575..2494351 [+], 777 | 374300593 | hypothetical protein | |
19 | Desaf_2248 | 2494399..2496678 [+], 2280 | 374300594 | Rhs element Vgr protein | TssI |
20 | Desaf_2249 | 2496687..2500433 [+], 3747 | 374300595 | hypothetical protein | |
21 | Desaf_2250 | 2500430..2501497 [+], 1068 | 374300596 | pentapeptide repeat-containing protein | |
22 | Desaf_2251 | 2501518..2502144 [+], 627 | 374300597 | hypothetical protein | |
23 | Desaf_2252 | 2502155..2502559 [+], 405 | 374300598 | hypothetical protein | |
24 | Desaf_2253 | 2503008..2503721 [-], 714 | 374300599 | Smr protein/MutS2 | |
25 | Desaf_2254 | 2503881..2505308 [+], 1428 | 374300600 | hypothetical protein | |
26 | Desaf_2255 | 2505710..2506699 [+], 990 | 374300601 | heat shock protein DnaJ domain-containing protein | |
27 | Desaf_2256 | 2506718..2507032 [+], 315 | 374300602 | hypothetical protein | |
28 | Desaf_2257 | 2507127..2509793 [+], 2667 | 374300603 | ATP-dependent chaperone ClpB | TssH |
29 | Desaf_2258 | 2510256..2510837 [+], 582 | 374300604 | NADPH-dependent FMN reductase | |
30 | Desaf_2259 | 2511114..2511407 [+], 294 | 374300605 | hypothetical protein | |
31 | Desaf_2260 | 2511452..2513212 [-], 1761 | 374300606 | hypothetical protein | |
32 | Desaf_2261 | 2513303..2515642 [+], 2340 | 374300607 | cysteine synthase | |
33 | Desaf_2262 | 2515632..2515931 [-], 300 | 374300608 | cold-shock protein | |
34 | Desaf_2263 | 2515928..2516146 [-], 219 | 374300609 | translation initiation factor IF-1 | |
35 | Desaf_2264 | 2516295..2516678 [-], 384 | 374300610 | hypothetical protein | |
36 | Desaf_2265 | 2516815..2517393 [-], 579 | 374300611 | hypothetical protein | |
37 | Desaf_2266 | 2517532..2518356 [-], 825 | 374300612 | purine nucleoside phosphorylase I | |
38 | Desaf_2267 | 2518480..2519235 [+], 756 | 374300613 | MotA/TolQ/ExbB proton channel | |
39 | Desaf_2268 | 2519225..2519974 [+], 750 | 374300614 | OmpA/MotB domain-containing protein | TagL |
40 | Desaf_2269 | 2519991..2520389 [+], 399 | 374300615 | type IV pilus assembly PilZ | |
41 | Desaf_2270 | 2520836..2522251 [+], 1416 | 374300616 | pyruvate carboxylase | |
42 | Desaf_2271 | 2522364..2524616 [+], 2253 | 374300617 | Acetyl-CoA carboxylase | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein