I. Summary

SecReT6 ID	531
Strain	Desulfovibrio africanus str. Walvis Bay
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_016629
Location	2476499..2519974
Comment
Function	N/A
T6SS Type	Type i; subtype i1
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	2	1	1	1	0	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	Desaf_2229	2471586..2472191 [+], 606	374300576	hypothetical protein
2	Desaf_2230	2472194..2472550 [+], 357	374300577	hypothetical protein
3	Desaf_2231	2472664..2473341 [-], 678	374300578	hypothetical protein
4	Desaf_2232	2473427..2474269 [+], 843	374300579	hypothetical protein
5	Desaf_2233	2474273..2474983 [+], 711	374300580	endonuclease/exonuclease/phosphatase
6	Desaf_2234	2475177..2475398 [+], 222	374300581	hypothetical protein
7	Desaf_2235	2476499..2477035 [+], 537	374300582	type VI secretion lipoprotein	TssJ
8	Desaf_2236	2477035..2478423 [+], 1389	374300583	type VI secretion protein	TssK
9	Desaf_2237	2478427..2479095 [+], 669	374300584	DotU family type IV / VI secretion system protein	TssL
10	Desaf_2238	2479097..2482579 [+], 3483	374300585	hypothetical protein	TssM
11	Desaf_2240	2485130..2485612 [+], 483	374300586	type VI secretion protein	TssB
12	Desaf_2241	2485624..2487111 [+], 1488	374300587	type VI secretion protein EvpB	TssC
13	Desaf_2242	2487163..2487645 [+], 483	374300588	type VI secretion system effector	TssD
14	Desaf_2243	2487751..2488167 [+], 417	374300589	type VI secretion system lysozyme-like protein	TssE
15	Desaf_2244	2488181..2489914 [+], 1734	374300590	type VI secretion protein	TssF
16	Desaf_2245	2489878..2490945 [+], 1068	374300591	type VI secretion protein	TssG
17	Desaf_2246	2490942..2493566 [+], 2625	374300592	type VI secretion ATPase, ClpV1 family	TssH
18	Desaf_2247	2493575..2494351 [+], 777	374300593	hypothetical protein
19	Desaf_2248	2494399..2496678 [+], 2280	374300594	Rhs element Vgr protein	TssI
20	Desaf_2249	2496687..2500433 [+], 3747	374300595	hypothetical protein
21	Desaf_2250	2500430..2501497 [+], 1068	374300596	pentapeptide repeat-containing protein
22	Desaf_2251	2501518..2502144 [+], 627	374300597	hypothetical protein
23	Desaf_2252	2502155..2502559 [+], 405	374300598	hypothetical protein
24	Desaf_2253	2503008..2503721 [-], 714	374300599	Smr protein/MutS2
25	Desaf_2254	2503881..2505308 [+], 1428	374300600	hypothetical protein
26	Desaf_2255	2505710..2506699 [+], 990	374300601	heat shock protein DnaJ domain-containing protein
27	Desaf_2256	2506718..2507032 [+], 315	374300602	hypothetical protein
28	Desaf_2257	2507127..2509793 [+], 2667	374300603	ATP-dependent chaperone ClpB	TssH
29	Desaf_2258	2510256..2510837 [+], 582	374300604	NADPH-dependent FMN reductase
30	Desaf_2259	2511114..2511407 [+], 294	374300605	hypothetical protein
31	Desaf_2260	2511452..2513212 [-], 1761	374300606	hypothetical protein
32	Desaf_2261	2513303..2515642 [+], 2340	374300607	cysteine synthase
33	Desaf_2262	2515632..2515931 [-], 300	374300608	cold-shock protein
34	Desaf_2263	2515928..2516146 [-], 219	374300609	translation initiation factor IF-1
35	Desaf_2264	2516295..2516678 [-], 384	374300610	hypothetical protein
36	Desaf_2265	2516815..2517393 [-], 579	374300611	hypothetical protein
37	Desaf_2266	2517532..2518356 [-], 825	374300612	purine nucleoside phosphorylase I
38	Desaf_2267	2518480..2519235 [+], 756	374300613	MotA/TolQ/ExbB proton channel
39	Desaf_2268	2519225..2519974 [+], 750	374300614	OmpA/MotB domain-containing protein	TagL
40	Desaf_2269	2519991..2520389 [+], 399	374300615	type IV pilus assembly PilZ
41	Desaf_2270	2520836..2522251 [+], 1416	374300616	pyruvate carboxylase
42	Desaf_2271	2522364..2524616 [+], 2253	374300617	Acetyl-CoA carboxylase

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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