I. Summary

SecReT6 ID	532
Strain	Granulicella mallensis MP5ACTX8
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_016631
Location	3536093..3558760
Comment
Function	N/A
T6SS Type	Type i; subtype i4b
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	0	2	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	AciX8_2865	3531721..3534792 [-], 3072	374311768	serine/threonine protein kinase
2	AciX8_2866	3535190..3535534 [-], 345	374311769	PAAR repeat-containing protein	PAAR
3	AciX8_2867	3535546..3536028 [-], 483	374311770	hypothetical protein
4	AciX8_2868	3536093..3538126 [-], 2034	374311771	ImpA family type VI secretion-associated protein	TssI
5	AciX8_2869	3538203..3540905 [-], 2703	374311772	type VI secretion ATPase, ClpV1 family	TssH
6	AciX8_2870	3540950..3542023 [-], 1074	374311773	type VI secretion protein	TssG
7	AciX8_2871	3541987..3543831 [-], 1845	374311774	type VI secretion protein	TssF
8	AciX8_2872	3543836..3544297 [-], 462	374311775	type VI secretion system lysozyme-like protein	TssE
9	AciX8_2873	3544312..3546210 [-], 1899	374311776	type VI secretion-associated protein, ImpA family	TssA
10	AciX8_2874	3546210..3546941 [-], 732	374311777	virulence protein SciE type	TagJ
11	AciX8_2875	3546955..3547446 [-], 492	374311778	hypothetical protein	TssD
12	AciX8_2876	3547508..3549010 [-], 1503	374311779	type VI secretion protein EvpB	TssC
13	AciX8_2877	3549007..3549522 [-], 516	374311780	type VI secretion protein	TssB
14	AciX8_2878	3549820..3549942 [-], 123	374311781	hypothetical protein
15	AciX8_2879	3550020..3551369 [+], 1350	374311782	type VI secretion protein	TssK
16	AciX8_2880	3551404..3552681 [-], 1278	374311783	hypothetical protein
17	AciX8_2881	3552987..3554360 [+], 1374	374311784	type VI secretion protein	TssK
18	AciX8_2882	3554706..3555497 [+], 792	374311785	DotU family type IV / VI secretion system protein	TssL
19	AciX8_2883	3555500..3558760 [+], 3261	374311786	ImcF domain-containing protein	TssM
20	AciX8_2884	3558777..3559529 [-], 753	374311787	protein serine/threonine phosphatase
21	AciX8_2885	3560053..3561075 [-], 1023	374311788	6-phosphogluconate dehydrogenase
22	AciX8_2886	3561370..3562464 [+], 1095	374311789	cytochrome c oxidase subunit II

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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